View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_high_6 (Length: 650)
Name: NF17162_high_6
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 3518346 - 3518706
Alignment:
| Q |
14 |
gaactattaaagtgttgtatttgtatgcagaaaacgcacattcttgacgagggtccttatctctaatcattttgatgctctaattgtaggagctatccaa |
113 |
Q |
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| T |
3518346 |
gaactatcaaagtgttgtatttgtatgcagaaaacgcacattcttgacgagggtccttatctctaatcattttgatgctctaattgtaggaactatccaa |
3518445 |
T |
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| Q |
114 |
ggaatcacatttttcagaatatgaaaaataaggacaaggtcatagagaggccggggactagtggatctagagatccaacactgcttctctgtttcacttc |
213 |
Q |
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| T |
3518446 |
ggaatcacatttttcagaatataaaaaataaggacaaggtcatagagaggtcggggactagtggatttaga--tccaacactgcttctccgtttcacttc |
3518543 |
T |
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| Q |
214 |
catgctctcaacttaatgtgactcctaggattgagcttgcgaccatcgttctgccgcctattcctttaccgaaaagaggtcatgaagtttctttgacatc |
313 |
Q |
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| T |
3518544 |
catgctctcaacttaatgtgactcccaggattgagcttgcgaccatcgttctgccgcctactcctttaccgaaaagaggtcatgaagtttctttgacatc |
3518643 |
T |
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| Q |
314 |
ctaaactcaaggtggataaaagaattagttggccagtctaacttggcggttggcaccggggac |
376 |
Q |
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| T |
3518644 |
ctaaactcaaggtggataaaagaattagttggccagtctaacttggcggttggcaccggggac |
3518706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 428 - 632
Target Start/End: Original strand, 3518712 - 3518915
Alignment:
| Q |
428 |
tgcctattatttgggctgccctcctccaatcttggagaggactatggagatcatcccccatgtcgaaatcaataatttgaccaacctaggccctgttggt |
527 |
Q |
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| T |
3518712 |
tgcctattatttgggctgccctcctccaatcttggagaggactatggagatcatccctcatgtcgaaatcaataatttgaccaatctaggccctgttggt |
3518811 |
T |
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| Q |
528 |
cagaggataccttccttgaaaacttttctgtacactatactcttaacaattccatgcaactgagcagtacttcatgagctacgataaggtctatcatgga |
627 |
Q |
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| T |
3518812 |
cagaggataccttcgttgaaaacttttctgtacactatactc-taacaattccatgcaactgagcagtagttcatgagctacgataaggtctatcatgga |
3518910 |
T |
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| Q |
628 |
caagc |
632 |
Q |
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| T |
3518911 |
caagc |
3518915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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