View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_low_10 (Length: 546)
Name: NF17162_low_10
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_10 |
 | |
|
| [»] scaffold0288 (2 HSPs) |
| |
|
| [»] scaffold0066 (2 HSPs) |
| | |
|
| [»] scaffold0465 (1 HSPs) |
| | |
|
| [»] scaffold0077 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0310 (1 HSPs) |
| | |
|
| [»] scaffold0198 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
| [»] scaffold0163 (2 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0288 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 162 - 546
Target Start/End: Complemental strand, 17431 - 17045
Alignment:
| Q |
162 |
cgataaatatcctttcataattaatcttttaattaaaaattaagatcatgctttccttaacatgtaaagagcttgatgata--attaccaaagaacatat |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17431 |
cgataaatatcctttcataattaatcttttaattaaaaattaagatcatgctttccttaacctgtaaagagcttgatgatataattaccaaagaacatat |
17332 |
T |
|
| Q |
260 |
acgtatttatgagattttgaatttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaatttaacacaaga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17331 |
acgtatttatgagattttgaatttcctgtctttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaatttaacacaaga |
17232 |
T |
|
| Q |
360 |
gtttgtttatcacataaaaacaatttaaaggaatttttgcttcaacaaatttaaccatcaaccaccttgctccataaccttgcattgactactcttcaag |
459 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17231 |
gtttgtttatcacttaaaaacaatttaaaggggtttttgcttcaacaaatttaaccatcaaccaccttgctccataaccttgccttgactactcttcaag |
17132 |
T |
|
| Q |
460 |
acaaaatcaatcaagtctaaatattcacgtgaaccttgatctacacaccgacctccactgggtagcacttgcatccaactatcctta |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17131 |
acaaaatcaatcaagtctaaatattcacgtgaaccttgatctactcaccgacctccactgggtagcacttgcatccaactatcctta |
17045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17564 - 17492
Alignment:
| Q |
1 |
gttgtgatgtactatacnnnnnnnncttaaatgaatcattcaactaaagatagcacaattttctttctctacc |
73 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
17564 |
gttgtgatgtactatacaaaaaaaacttaaatgaatcattcaactaaagatagcacaactttgtttctctacc |
17492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 281 - 408
Target Start/End: Original strand, 42114447 - 42114576
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
42114447 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
42114546 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaacaaa |
408 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
42114547 |
caatttcaaaggaatttttgcttcaacaaa |
42114576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 281 - 407
Target Start/End: Complemental strand, 14536945 - 14536817
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
14536945 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
14536846 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |
|
|
| T |
14536845 |
caatttcaaagggatttttgcttcaacaa |
14536817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 14529496 - 14529369
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||| | |||||| |
|
|
| T |
14529496 |
tttcctatccttaataaaattcactcaatagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttattatttaaaaa |
14529397 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaaca |
406 |
Q |
| |
|
|||||| ||||| ||||||||||||||| |
|
|
| T |
14529396 |
caatttcaaagggatttttgcttcaaca |
14529369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 32194158 - 32194031
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
32194158 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
32194059 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||||||||||| |
|
|
| T |
32194058 |
caagttcaaagggatttttgcttcaaca |
32194031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 27075303 - 27075432
Alignment:
| Q |
282 |
ttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa---tttaacacaagagtttgtttatcacataaaa |
378 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| || |||| | ||| ||||||||||||| ||||| |||||| |||||||||||| ||||| |
|
|
| T |
27075303 |
ttcctgtccttaatgaaatatactcaaaagcacacattaagtaaccatgtaaaattataatcttaatcttttaatacaagaatttgtttatcacttaaaa |
27075402 |
T |
|
| Q |
379 |
acaattt-aaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||||||| |||| ||||||||| |||||| |
|
|
| T |
27075403 |
acaatttcaaagagatttttgctacaacaa |
27075432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 407
Target Start/End: Original strand, 27155397 - 27155526
Alignment:
| Q |
282 |
ttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa---tttaacacaagagtttgtttatcacataaaa |
378 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| || |||| | ||| ||||||||||||| ||||| |||||| |||||||||||| ||||| |
|
|
| T |
27155397 |
ttcctgtccttaatgaaatatactcaaaagcacacattaagtaaccatgtaaaattataatcttaatcttttaatacaagaatttgtttatcacttaaaa |
27155496 |
T |
|
| Q |
379 |
acaattt-aaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||||||| |||| ||||||||| |||||| |
|
|
| T |
27155497 |
acaatttcaaagagatttttgctacaacaa |
27155526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 8407 - 8534
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
8407 |
tttcctatcattaataaaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
8506 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| |||||||| ||||||||||||||| |
|
|
| T |
8507 |
caagtttaaagggatttttgcttcaaca |
8534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 4 - 58
Alignment:
| Q |
354 |
acaagagtttgtttatcacataaaaacaa-tttaaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
4 |
acaagagtttgtttatcatttaaaaacaagtttaaagggatttttgcttcaacaa |
58 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 183116 - 183243
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
183116 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
183215 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaaca |
406 |
Q |
| |
|
|||||| ||||| ||||||||||||||| |
|
|
| T |
183216 |
caatttcaaagggatttttgcttcaaca |
183243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 288 - 406
Target Start/End: Original strand, 21984441 - 21984561
Alignment:
| Q |
288 |
tccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaacaa-ttt |
385 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||| ||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
21984441 |
tccttaacaaaattcactcaagagcacacattaaataacaaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaacaagttc |
21984540 |
T |
|
| Q |
386 |
aaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
21984541 |
aaagggatttttgcttcaaca |
21984561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 23751737 - 23751864
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
23751737 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
23751836 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
|||||| ||||| |||||| ||||||||| |
|
|
| T |
23751837 |
caatttcaaagggattttt-cttcaacaa |
23751864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 407 - 518
Target Start/End: Original strand, 20686827 - 20686938
Alignment:
| Q |
407 |
aatttaaccatcaaccaccttgctccataaccttgcattgactactcttcaagacaaaatcaatcaagtctaaatattcacgtgaaccttgatctacaca |
506 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||||| ||| ||||||||||| ||||||| || |||| || |||||||||||||||||| |
|
|
| T |
20686827 |
aatttaaccatcaaccaccttaatccttaaccttgccttgacttctcctcaagacaaaaccaatcaactccaaattctcgtttgaaccttgatctacaca |
20686926 |
T |
|
| Q |
507 |
ccgacctccact |
518 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20686927 |
ccgacctccact |
20686938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 397
Target Start/End: Original strand, 23742466 - 23742584
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| |||| || ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
23742466 |
tttcctatccttaataaaattcactaaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
23742565 |
T |
|
| Q |
380 |
caattt-aaaggaattttt |
397 |
Q |
| |
|
|||||| ||||| |||||| |
|
|
| T |
23742566 |
caatttcaaagggattttt |
23742584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 22693778 - 22693711
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaat |
348 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||| | | |||| |||||||||||||| |
|
|
| T |
22693778 |
tttcctatccttaataaaattcactcaagagcacacattaaatacccaaataaaattataatcttaat |
22693711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 41382590 - 41382463
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
41382590 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
41382491 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaaca |
406 |
Q |
| |
|
|||||| ||||| ||||||||||||||| |
|
|
| T |
41382490 |
caatttcaaagggatttttgcttcaaca |
41382463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 281 - 408
Target Start/End: Complemental strand, 2154592 - 2154463
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| || |||||| ||| ||||||||||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
2154592 |
tttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
2154493 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaaa |
408 |
Q |
| |
|
||| || ||||| ||||||||||||||||| |
|
|
| T |
2154492 |
caagttcaaagggatttttgcttcaacaaa |
2154463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 281 - 407
Target Start/End: Complemental strand, 2164427 - 2164299
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| || |||||| ||| ||||||||||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
2164427 |
tttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
2164328 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
|
|
| T |
2164327 |
caagttcaaagggatttttgcttcaacaa |
2164299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 40084540 - 40084668
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaattt-aacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| || |||||| ||| ||||||||||||||||| ||||||| | |||| |||||||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
40084540 |
tttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaatttcaatacaagagtttgtttatcatttaaaaa |
40084639 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
|
|
| T |
40084640 |
caagttcaaagggatttttgcttcaacaa |
40084668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 40094283 - 40094411
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| || |||||| ||| ||||||||||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
40094283 |
tttcctatctttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
40094382 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
|
|
| T |
40094383 |
caagttcaaagggatttttgcttcaacaa |
40094411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 518
Target Start/End: Complemental strand, 1686498 - 1686388
Alignment:
| Q |
409 |
tttaaccatcaaccaccttgctccataaccttgcattga-ctactcttcaagacaaaatcaatcaagtctaaatattcacgtgaaccttgatctacacac |
507 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||| ||| || ||||||||||| |||||||||| |||| |||| || |||||||||||||||| |
|
|
| T |
1686498 |
tttaaccatcaatcaccttgctccttaaccttgccttgaactattcctcaagacaaaaccaatcaagtccaaatcctcacttggaccttgatctacacac |
1686399 |
T |
|
| Q |
508 |
cgacctccact |
518 |
Q |
| |
|
||||||||||| |
|
|
| T |
1686398 |
cgacctccact |
1686388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 10804917 - 10804790
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||| ||||||| |||||| |
|
|
| T |
10804917 |
tttcctttccttaataaaattcactcaagagcacacattaaataaccaaataatattataatcttaattttaatacaagagtttttttatcatttaaaaa |
10804818 |
T |
|
| Q |
380 |
c-aatttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
| |||| ||||| |||||||||| |||| |
|
|
| T |
10804817 |
caaattcaaagggatttttgctttaaca |
10804790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 409
Target Start/End: Original strand, 29683302 - 29683432
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
29683302 |
tttcctatccttaatagaattcactcaaaagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
29683401 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaaat |
409 |
Q |
| |
|
||| || ||||| |||||||||||||||||| |
|
|
| T |
29683402 |
caagttcaaagggatttttgcttcaacaaat |
29683432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 43460834 - 43460961
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| |||||| |||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
43460834 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaa |
43460933 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||||||||||| |
|
|
| T |
43460934 |
caagttcaaagggatttttgcttcaaca |
43460961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 21079103 - 21079231
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||| || ||||||| | |||| ||||||||||||| ||||| |||||||||||||||| | |||||| |
|
|
| T |
21079103 |
tttcctatccttaataaaattcactcaagagcacaaattaaataaccaaataacattataatcttaattttaatacaagagtttgtttattatttaaaaa |
21079202 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
|
|
| T |
21079203 |
caagttcaaagggatttttgcttcaacaa |
21079231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 409
Target Start/End: Complemental strand, 9656495 - 9656365
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
9656495 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
9656396 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaaat |
409 |
Q |
| |
|
||| || ||||| |||||||||||||||||| |
|
|
| T |
9656395 |
caagttcaaagggatttttgcttcaacaaat |
9656365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 518
Target Start/End: Original strand, 6396155 - 6396237
Alignment:
| Q |
434 |
taaccttgcattgactactcttcaagacaaaatcaatcaagtctaaatattcacgtgaaccttgatctacacaccgacctccact |
518 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||||||| |||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
6396155 |
taaccttgcattgactactccttaagacaaaatc-atcaagtccaaatccttgcttgaaccttgatctacacacc-acctccact |
6396237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 409
Target Start/End: Original strand, 51283521 - 51283651
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||| ||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
51283521 |
tttcctatccttaatagaattcactcaagagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
51283620 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaaat |
409 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |
|
|
| T |
51283621 |
caagtttaaagggatttttgcttcaacaaat |
51283651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 20178388 - 20178261
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||| ||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
20178388 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattgtaatcttaattttaacacaagagtttgtttatcatttaaaaa |
20178289 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||||||||||| |
|
|
| T |
20178288 |
caagttcaaagggatttttgcttcaaca |
20178261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 275 - 391
Target Start/End: Complemental strand, 20145594 - 20145477
Alignment:
| Q |
275 |
tttgaatttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcaca |
373 |
Q |
| |
|
|||||||||| ||||||||||||||| || ||| || |||||| |||||||||||||| || |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
20145594 |
tttgaatttcatgtccttaataaaattcatccaagaggacacattaaataacaacataaaatcataatcttaattttaacacaagagtctgtttatcatt |
20145495 |
T |
|
| Q |
374 |
taaaaacaatttaaagga |
391 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20145494 |
taaaaacaatttaaagga |
20145477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 407
Target Start/End: Complemental strand, 20182945 - 20182817
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||| ||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
20182945 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattgtaatcttaattttaatacaagagtttgtttatcattgaaaaa |
20182846 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
|
|
| T |
20182845 |
caagttcaaagggatttttgcttcaacaa |
20182817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 277 - 395
Target Start/End: Complemental strand, 17878156 - 17878036
Alignment:
| Q |
277 |
tgaatttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacata |
375 |
Q |
| |
|
||||||||| |||||||||||||| || |||| ||||||||| |||||||||||||| || || ||||||| ||||||| |||||||| ||||||| || |
|
|
| T |
17878156 |
tgaatttccagtccttaataaaattcattcaagagcacacattaaataacaacataaaatcatgatcttaattttaacataagagtttatttatcattta |
17878057 |
T |
|
| Q |
376 |
aaaacaattt-aaaggaattt |
395 |
Q |
| |
|
|||| ||||| |||||||||| |
|
|
| T |
17878056 |
aaaataatttcaaaggaattt |
17878036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 518
Target Start/End: Complemental strand, 41141565 - 41141454
Alignment:
| Q |
407 |
aatttaaccatcaaccaccttgctccataaccttgcattgactactcttcaagacaaaatcaatcaagtctaaatattcacgtgaaccttgatctacaca |
506 |
Q |
| |
|
|||||||| ||||||||| ||| ||| ||||||||| ||||| | || ||||||||||| | ||||||||||||| || | |||||| ||||||| ||| |
|
|
| T |
41141565 |
aatttaactatcaaccacgttggtccttaaccttgccttgaccattcctcaagacaaaaccgatcaagtctaaatcctcgcttgaaccctgatctataca |
41141466 |
T |
|
| Q |
507 |
ccgacctccact |
518 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41141465 |
ccgacctccact |
41141454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 407 - 518
Target Start/End: Original strand, 31928482 - 31928594
Alignment:
| Q |
407 |
aatttaaccatcaaccaccttgctccataaccttgcattg-actactcttcaagacaaaatcaatcaagtctaaatattcacgtgaaccttgatctacac |
505 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| |||| || |||||||||| |||||||||| ||| | ||||| |||||| |||| |
|
|
| T |
31928482 |
aatttaaccatcaaccaccttgctccttaaccttgccttgaactattccccaagacaaaaccaatcaagtccaaagccctgcttgaactttgatccacac |
31928581 |
T |
|
| Q |
506 |
accgacctccact |
518 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31928582 |
accgacctccact |
31928594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0465 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0465
Description:
Target: scaffold0465; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 281 - 407
Target Start/End: Complemental strand, 7359 - 7231
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaat-ttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| |||||||||||||| |||| |||||||||||||||||| || ||| |
|
|
| T |
7359 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaatcttaatacaagagtttgtttatcatttagaaa |
7260 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |
|
|
| T |
7259 |
caatttcaaagggatttttgcttcaacaa |
7231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 21137 - 21264
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
21137 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
21236 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||||||||||| |
|
|
| T |
21237 |
caagttcaaagggatttttgcttcaaca |
21264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 377319 - 377192
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| ||||||| | |||| |||||| |||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
377319 |
tttcctatccttaataaaattcactcaaaagcacacattaaataaccaaataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaa |
377220 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||||||||||| |
|
|
| T |
377219 |
caagttcaaagggatttttgcttcaaca |
377192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 6082160 - 6082287
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
6082160 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
6082259 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||||||||||| |
|
|
| T |
6082260 |
caagttcaaagggatttttgcttcaaca |
6082287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 281 - 407
Target Start/End: Complemental strand, 24843242 - 24843114
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| |||||| |||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
24843242 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaa |
24843143 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
|||||| ||||| ||||||| |||||||| |
|
|
| T |
24843142 |
caatttcaaagggatttttgtttcaacaa |
24843114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 518
Target Start/End: Complemental strand, 17759280 - 17759168
Alignment:
| Q |
407 |
aatttaaccatcaaccaccttgctccataaccttgcattg-actactcttcaagacaaaatcaatcaagtctaaatattcacgtgaaccttgatctacac |
505 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| ||| |||| || |||||||||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
17759280 |
aatttaaccatcaaccaccttgctccttaacattgccttgaactattccctaagacaaaatcaatcaagtctaaagccctgcttgaaccttgatccacac |
17759181 |
T |
|
| Q |
506 |
accgacctccact |
518 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17759180 |
accgacctccact |
17759168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 3791951 - 3792020
Alignment:
| Q |
54 |
cacaattttctttctctaccaacttggtttttccctgctgcgtgttaccttggtggataagtcattcaaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||| | |||||||||| |
|
|
| T |
3791951 |
cacaattttctttctctaccaacttggagtttcccttctgcatgttacctt-gtggatgaatcattcaaaa |
3792020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0310 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0310
Description:
Target: scaffold0310; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 19040 - 19168
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| |||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
19040 |
tttcctatccttaataaaattcactcaagagcacacattcaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
19139 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
||| || ||||| |||||||||||||||| |
|
|
| T |
19140 |
caagttcaaagggatttttgcttcaacaa |
19168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 288 - 406
Target Start/End: Complemental strand, 16331 - 16211
Alignment:
| Q |
288 |
tccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaacaa-ttt |
385 |
Q |
| |
|
||||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
16331 |
tccttaataaaattcactcaagagcacacattaaataaccaaataacattataatcttaattttaatacaagagtttgtttatcatttaaaaacaagttc |
16232 |
T |
|
| Q |
386 |
aaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
16231 |
aaagggatttttgcttcaaca |
16211 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 407
Target Start/End: Original strand, 28721981 - 28722108
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| |||||| | |||| ||||||||||||| ||||| | |||||||||||||||| |||||| |
|
|
| T |
28721981 |
tttcctatccttaataaaattcactcaagagcacacat-taataaccaaataaaattataatcttaattttaatataagagtttgtttatcatttaaaaa |
28722079 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaacaa |
407 |
Q |
| |
|
|||||| ||||| |||||||||||||||| |
|
|
| T |
28722080 |
caatttcaaagggatttttgcttcaacaa |
28722108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 48814613 - 48814740
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| |||||| |||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
48814613 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataaaattatactcttaattttaatacaagagtttgtttatcatttaaaaa |
48814712 |
T |
|
| Q |
380 |
caattt-aaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||||| ||||| ||||||| ||||||| |
|
|
| T |
48814713 |
taatttcaaagggatttttgtttcaaca |
48814740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 518
Target Start/End: Complemental strand, 6431389 - 6431277
Alignment:
| Q |
407 |
aatttaaccatcaaccaccttgctccataaccttgcattgactactct-tcaagacaaaatcaatcaagtctaaatattcacgtgaaccttgatctacac |
505 |
Q |
| |
|
||||||||||||||||||| | |||| || |||||| |||| | || ||||||||||| |||||||||| ||| | | | |||||||||||| | || |
|
|
| T |
6431389 |
aatttaaccatcaaccaccattctccttatccttgccttgaacaatccctcaagacaaaaccaatcaagtccaaagctccgcttgaaccttgatccatac |
6431290 |
T |
|
| Q |
506 |
accgacctccact |
518 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6431289 |
tccgacctccact |
6431277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 38807 - 38680
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| |||| |||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
38807 |
tttcctatcctaaataaaattcactcaagagcacacattaaataaccaaataaaattataatcttaattttaatacaagagtttgtttatcatttaaaaa |
38708 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||| ||||||| |
|
|
| T |
38707 |
caagttcaaagggatttttgtttcaaca |
38680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 281 - 406
Target Start/End: Complemental strand, 41556 - 41430
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaa-tttaacacaagagtttgtttatcacataaaaa |
379 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||| ||||||| | |||| | ||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
41556 |
tttcctatccttaataaaattcactcaagagcacacattaaataaccaaataa-aatataatcttaattttaatacaagagtttgtttatcatttaaaaa |
41458 |
T |
|
| Q |
380 |
caa-tttaaaggaatttttgcttcaaca |
406 |
Q |
| |
|
||| || ||||| ||||||||||||||| |
|
|
| T |
41457 |
caagttcaaagggatttttgcttcaaca |
41430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 15234 - 15164
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaa-agcacacatcaaataacaacataagattataatcttaattt |
350 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||| ||||||| | |||| |||||||||||||||| |
|
|
| T |
15234 |
tttcctatccttaataaaattcactcaaagagcacacattaaataaccaaataacattataatcttaattt |
15164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 23954 - 23885
Alignment:
| Q |
281 |
tttcctgtccttaataaaatacactcaaaagcacacatcaaataacaacataagattataatcttaattt |
350 |
Q |
| |
|
|||||| ||||||||||||| |||| || ||||||||| ||||||| | |||| |||||||||||||||| |
|
|
| T |
23954 |
tttcctatccttaataaaattcacttaagagcacacattaaataaccaaataacattataatcttaattt |
23885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 81130 - 81166
Alignment:
| Q |
411 |
taaccatcaaccaccttgctccataaccttgcattga |
447 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
81130 |
taaccatcaaccaccttgctccttaaccttgccttga |
81166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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