View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_11 (Length: 535)
Name: NF17162_low_11
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 68 - 518
Target Start/End: Original strand, 55695428 - 55695875
Alignment:
| Q |
68 |
ctacttttttcacatgtcaaagttgatgagaagcttttccgctttatttgtttggtttcttttgtcattgatcttattgtgaaggtaagtctatgggtat |
167 |
Q |
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| T |
55695428 |
ctacttttttcacatgtcaaagttgatgagaagcttttctgctttatttgtttggcttcttttgtcattgatcttattgtgaaggta---ctatgggtat |
55695524 |
T |
|
| Q |
168 |
ggctttacggatttattattatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatannnnnnnnnnn |
267 |
Q |
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| T |
55695525 |
ggctttacggatttattattatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatattttacttttt |
55695624 |
T |
|
| Q |
268 |
nnnnnngccgaaactctatcataatttacccacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaaggggtt |
367 |
Q |
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| T |
55695625 |
tattttgccaaaactctatcataatttactcacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaagggatt |
55695724 |
T |
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| Q |
368 |
ttatgaaataaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactgatgacaaaaataatgcaattttgatttaaaaagttggctt |
467 |
Q |
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| T |
55695725 |
ttatgaaataaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactaatgacaaaaataatgcaattttgatttaaaaagttggctt |
55695824 |
T |
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| Q |
468 |
gaattttgtttttctcttctgaaaggaaaggacaaaagcaagaatgataat |
518 |
Q |
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| T |
55695825 |
gaattttgtttttctcttctgaaaggaaaggacaaaagcaagaatgataat |
55695875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 55695385 - 55695419
Alignment:
| Q |
14 |
cacagaagcataaaaagtgatcagaaaggagtcta |
48 |
Q |
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| T |
55695385 |
cacagaagcataaaaagtgatcagaaaggagtcta |
55695419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 277 - 517
Target Start/End: Complemental strand, 35804064 - 35803815
Alignment:
| Q |
277 |
gaaactctatcataatttacccacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaaggggttttatgaaat |
376 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||| ||||| |||||| ||||| ||||| |
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| T |
35804064 |
gaaagtctatcataatttacccaaaggatttcagaaagaggg-aggagtgcaccacaagaaaattagaaaacaaacttttgtaaagggattttaagaaat |
35803966 |
T |
|
| Q |
377 |
aaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactgat------------gacaaaaataatgcaattttgatttaaaaagttgg |
464 |
Q |
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| T |
35803965 |
aaaaccacattatcaaaaggcaagttaaagagcctta-aaaattgcaactgataaaaaaaatgacaacaaaaataatgcaattttgaattaaaaagttgg |
35803867 |
T |
|
| Q |
465 |
cttgaattttgtttttctcttctgaaaggaaaggacaaaagcaagaatgataa |
517 |
Q |
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| T |
35803866 |
cttgaattttgtttttctcttctgaaaggaagggacaaaaacaa-aatgataa |
35803815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 35804319 - 35804198
Alignment:
| Q |
73 |
tttttcacatgtcaaagttgatgagaagcttttccgctttatttgtttggtttc---ttttgtcattgatcttattgtgaaggtaagtctatgggtatgg |
169 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
35804319 |
tttttcacaagtcaaagttgatgagaagcttttctattttatttgtttggttttgttttttttcattgatcttattttgaaggtaagtctttgggtatgg |
35804220 |
T |
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| Q |
170 |
ctttacggatttattattatat |
191 |
Q |
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|||||| || |||||||||||| |
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| T |
35804219 |
ctttacagaattattattatat |
35804198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 35804127 - 35804087
Alignment:
| Q |
216 |
gtttggtcattatgtatttctcctggtttgaataaattata |
256 |
Q |
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| T |
35804127 |
gtttggtcattatgtatttcttctggtttgaataaattata |
35804087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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