View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_12 (Length: 487)
Name: NF17162_low_12
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 25 - 477
Target Start/End: Original strand, 4932692 - 4933144
Alignment:
| Q |
25 |
gtattgctttaaagaacaaaatctaaaatgaaaatatatgaaactgaaatgattataattacacctctaatataaattatagagcataatgacatacaca |
124 |
Q |
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| T |
4932692 |
gtattgctttgaagaacaaaatctaaaatgaaaatatatgaaactaaaatgattataattacacctctaatataaattatagagcataatgacatacaca |
4932791 |
T |
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| Q |
125 |
tacaagcaagaagatatgatgagagactcacataggaaattgaaatgaatggttgctcatatcgctttcgactgaacggtacgagacattcgtcgcataa |
224 |
Q |
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| T |
4932792 |
tataagcaagaagatatgatgagagactcacataggaaattgaaatgaatggttgctcatatcgctttcgactgaacggtacgagacattggtcgcataa |
4932891 |
T |
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| Q |
225 |
ttcttaggttcttcactaggaaccgccaccgctttattacgatcttcatgaattttttccaatgtatttgtattgacatttgtcgatgttttggttttat |
324 |
Q |
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| T |
4932892 |
ttcttaggttcttcactaggaaccaccaccgctttattatgatcttcatgaattttgtccaatgtatttgtattgacatttgtcgatgttttggttttat |
4932991 |
T |
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| Q |
325 |
catggtcatcgtccttcaaaactaaatctattttttgttttgatgttttaatattgtccttccccaaaggcaaatttgtcgtttcatctaatgcatctat |
424 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4932992 |
catggtcatcgtccttcaaaactaaatctattttttcttttgatgttttaatattgtccttccccaaaggcaaatttgtcgtttcatctaatgcatctat |
4933091 |
T |
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| Q |
425 |
tgagccatgagacgagtccggcgacatagaatgtctctccttatccacttcat |
477 |
Q |
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| T |
4933092 |
tgagccataagacgagtccggcgacatagaatgtctctccttacccacttcat |
4933144 |
T |
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