View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_14 (Length: 479)
Name: NF17162_low_14
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 10526738 - 10526524
Alignment:
| Q |
80 |
catatcagttctctgatcttggctgctaaaagtccgttcttctataaggcagaccaagatctctatatcttta-------cattgtatagttttgccaaa |
172 |
Q |
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| T |
10526738 |
catatcagttctccgatcttggctgctaaaagcccgttcttctataaggtagaccaagttctctatatctttatattgtacattgtatagttctgccaaa |
10526639 |
T |
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| Q |
173 |
aatttgttttcttagcagtgtttatttacctgttgcagcttttttccaatgggatgagggaatcagaactgagacatgtcactcttaggattaatgcctc |
272 |
Q |
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| T |
10526638 |
aatatgttttcttagcagtgtttatttaccttttgcagcttttttcgaatgggatgagggaatcggaactgagacatgtcacccttagaattaatgcctc |
10526539 |
T |
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| Q |
273 |
tggtataaacattga |
287 |
Q |
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| T |
10526538 |
tggtataaacattga |
10526524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 10526826 - 10526760
Alignment:
| Q |
15 |
cataggtgatgaggttgtaaaagacaatgatgaacccaacctgggcatggattactctgaagctgca |
81 |
Q |
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| T |
10526826 |
cataggtgatgaggctgtaaacgacaatgatgaacccaacctgggcatggattactctgaacctgca |
10526760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 300 - 461
Target Start/End: Original strand, 22996503 - 22996660
Alignment:
| Q |
300 |
atagctctatttcattttaacgagatggtttgaatcttagatcagctgcattacatgatatgcattgaaatttttagcacatttattctcttatgagtca |
399 |
Q |
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| T |
22996503 |
atagctctatttcattttaacgagacggtttgaatcttagatcagctgcattacatgatatg--ttgaaatttttatcacaattattctct--tgagtca |
22996598 |
T |
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| Q |
400 |
tcatctgaataagttatttgaatttttagcatataggacagtacactagcgagtttatattc |
461 |
Q |
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| T |
22996599 |
tcatctatataagttatttggatttttagcatataggacagtacactagcgagtttatattc |
22996660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 923874 - 923940
Alignment:
| Q |
15 |
cataggtgatgaggttgtaaaagacaatgatgaacccaacctgggcatggattactctgaagctgca |
81 |
Q |
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| T |
923874 |
cataggtgatgaggttgtaaaagacaatgatgaacctaacctgggcatggattgctctgaagctgca |
923940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 461
Target Start/End: Complemental strand, 22964946 - 22964906
Alignment:
| Q |
421 |
atttttagcatataggacagtacactagcgagtttatattc |
461 |
Q |
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| T |
22964946 |
atttttagcatataggacagtacactagcgagtttatattc |
22964906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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