View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_low_16 (Length: 459)
Name: NF17162_low_16
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Original strand, 30415463 - 30415896
Alignment:
| Q |
15 |
acagacagcagattaattgaagatttcaactcattaacatctgatattttttctgctctcctcaattcgccttcttgtatatatgccaaatgagttgccc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415463 |
acagacagcagattaattgaagatttcaactcattaacatctgatattttttctgctctcctcaattcgccttcttgtatatatgccaaatgagttgccc |
30415562 |
T |
|
| Q |
115 |
atgtctccagtccgtcaaaaatgtgagttgcatatacaattgtagcttctctctgcaaaaaaggaatactttaat-aacagatttggacaatatacagta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30415563 |
atgtctccagtccgtcaaaaatgtgagttgcatatacaactgtagcttctctctgcaaaaaaggaatactttaataaacagatttggacaatatacagta |
30415662 |
T |
|
| Q |
214 |
tatactttatctcttgtagaaactagagatcaaactcgttagtctannnnnnnaaaattgtcnnnnnnnagttagaattcatgagcaggttatggtattg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30415663 |
tatactttatctcttgtagaaactagagatcaaactcgttagtctattttttt-aaattgtc-ttttttagttagaattcatgagcaggttatggtattg |
30415760 |
T |
|
| Q |
314 |
ttcaattcatgtaaccaaccacactaggtggaaaaaggattagatgttgcttttacactatttccaactaggatcggctatcatcctgttttgcattggg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415761 |
ttcaattcatgtaaccaaccacactaggtggaaaaatgcttagatgttgcttttacactatttccaactaggatcggctatcatcctgttttgcattggg |
30415860 |
T |
|
| Q |
414 |
gacatcctcgttgcagttttcttaaatttatattct |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30415861 |
gacatcctcgttgcagttttcttaaatttatattct |
30415896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University