View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_18 (Length: 436)
Name: NF17162_low_18
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_18 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 25802444 - 25802018
Alignment:
| Q |
1 |
tcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802444 |
tcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtgg |
25802345 |
T |
|
| Q |
101 |
aggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25802344 |
aggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcagcgtgtttcctggtggaatttgcatga |
25802245 |
T |
|
| Q |
201 |
actgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacg |
300 |
Q |
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| T |
25802244 |
actgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacg |
25802145 |
T |
|
| Q |
301 |
tgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802144 |
tgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctca |
25802045 |
T |
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| Q |
401 |
ctgtatttcattgttctgtttcatctc |
427 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
25802044 |
ctgtatttcattgttctgtttcttctc |
25802018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 83 - 427
Target Start/End: Complemental strand, 25816430 - 25816111
Alignment:
| Q |
83 |
ttcgcgcaacatgggtggaggtcgaacccacaggatttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttc |
182 |
Q |
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||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||| |
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| T |
25816430 |
ttcgcgcaacatgggtggaggtcaaatccacatgatttgcagtggtatacaaacccgttcacgtc---------------gcagtaacgcggcgtgtttc |
25816346 |
T |
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| Q |
183 |
ctggtggaatttgcatgaactgaaaggtgcattttgtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgca |
282 |
Q |
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| T |
25816345 |
ctggtgggtttgg----------aaggtgcattttgtgtagaacgcatggaagagtgtggtagaaggtattgtgcagtgtgtgtgaaggtcattgtcaca |
25816256 |
T |
|
| Q |
283 |
gatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtgg |
382 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25816255 |
aatgctgcatttgtaacgtgaacctatgcctacttcgttgcaaccgtcgcatttgaatggaaattcgttgtgttcgaatcttagtttgtgttttgggtgg |
25816156 |
T |
|
| Q |
383 |
ctgaaatgggatatctcactgtatttcattgttctgtttcatctc |
427 |
Q |
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|||||||| |||||||| ||||||||||||||||||||| |||| |
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| T |
25816155 |
ctgaaatgtgatatctcgttgtatttcattgttctgtttcttctc |
25816111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25816494 - 25816435
Alignment:
| Q |
1 |
tcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttcccc |
60 |
Q |
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|||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
25816494 |
tcttccacaacggtgacatggtgaactcacttttctataaaggtaaagtttcatttcccc |
25816435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 112104 - 112507
Alignment:
| Q |
18 |
atggtgaactcactttcctgtgaaggtaaagtttcatttccccatcgttaagaaccatcggcagcttcgcgcaacatgggtggaggtcgaacccacagga |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
112104 |
atggtgaactcactttcctgtaaaggtaaagtttcatttccccgtcgttaagaaccatcggcagctttgcgcaacacgggtggaggtcgaacccacagga |
112203 |
T |
|
| Q |
118 |
tttgcagtggtaaacaaacccgttcacgtccttttcgcatgcgttgcaataacgcggcgtgtttcctggtggaatttgcatgaactgaaaggtgcatttt |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
112204 |
tttgcagtggtaaacaaacccgttcacatccttttcgcatgcgttgcagtaatgcggcgtgtttcctggtgggatttgcatgaattggaaggtgcatttt |
112303 |
T |
|
| Q |
218 |
gtgtaaaatggatggaagagtgtggtggaaggtattgcgcagtgtgtgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctattt |
317 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
112304 |
gtgtaaaatggatcgaagagtgtggtggaaggtattgcgcagtgtgtatgaaggtcgtagtcgcagatgctgcatttttaacgtgaatcgatgcctattt |
112403 |
T |
|
| Q |
318 |
ctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgggatatctcactgtatttcattgttct |
417 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
112404 |
ctttgcagccatcgcatttgaatggaaattcgttgtgctcgaatcttagtttgtgttttgggtggctgaaatgtgatatctcactgtatttcattgttct |
112503 |
T |
|
| Q |
418 |
gttt |
421 |
Q |
| |
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|||| |
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|
| T |
112504 |
gttt |
112507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 406
Target Start/End: Complemental strand, 12530663 - 12530521
Alignment:
| Q |
264 |
tgtgaaggtcgtagtcgcagatgctgcatttgtaacgtgaacctatgcctatttctttgcagccgtcgcatttgaatggaaattcgttgtgctcgaatct |
363 |
Q |
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||||||| || ||||| || ||| |||| ||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||| ||| | ||| | |
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| T |
12530663 |
tgtgaagatcatagtcacaaatgttgcagctgtaacgcgaacctatgccaatttctttgcagccatcacatttgaatggaaactcggagtgttgaaatgt |
12530564 |
T |
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| Q |
364 |
tagtttgtgttttgggtggctgaaatgggatatctcactgtat |
406 |
Q |
| |
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|||||| |||||| | ||||| ||||| ||||||||| ||||| |
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| T |
12530563 |
tagtttatgtttttgatggctaaaatgagatatctcattgtat |
12530521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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