View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_low_21 (Length: 387)
Name: NF17162_low_21
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 2984279 - 2984636
Alignment:
| Q |
18 |
catgtttagacatgacaaaacatgtatgaagaaggagtagatataaagtgtgtacatattttgtaaaatttggccatgtcattgaaacatgttataaaaa |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2984279 |
catgtttagacatgacaagacatgtatgaag---gagtagatataaagtgtgtacatattttgtaaaatttggccatgtcattgaaacatgttataaaaa |
2984375 |
T |
|
| Q |
118 |
tgatcattttgtccacaaatttcttagtatcttgtcgaaatttttatgcaaacaattcagagagtgaagccaaattcaactatcattgttctttaaagga |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2984376 |
tgatcattttatccacaaatttcttagtatcttgtcgaaatttttatgcaaacaattcagagagtgaagccaaattcaactatcattgttctttaaagga |
2984475 |
T |
|
| Q |
218 |
actataagaccctagtccacctgtttttactctggatcagtaagtatatcagatggtttgcactgattcaacatgcatcatagttgattaatcaagctag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2984476 |
actataagaccctagtccacctgtttttactctggatcagtaagtatatcagatggtttgcactgattcaacatgcatcatagttgattaatcaagctag |
2984575 |
T |
|
| Q |
318 |
cctcactgtcacaattctgatt---cagcgtttatcagattgtcttacatggttttgttca |
375 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2984576 |
cctcactgtcacaactctgattcagcagcgtatatcagattgtcttacatggttttgttca |
2984636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University