View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_24 (Length: 379)
Name: NF17162_low_24
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 43224872 - 43224493
Alignment:
| Q |
1 |
tatcctattatacaactctttcttatatctcgtctctagtaataatgttttgctttgaaattgattaatatagtcaatattatctgaaaagaacagcgga |
100 |
Q |
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| T |
43224872 |
tatcctgttatacaactctttcttatatctcgtctctagtaataatgttttgctttgaaattgattaatatagtcaatattatctgaaaagaacagcgga |
43224773 |
T |
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| Q |
101 |
gaacaacatgaaatcatgattgcaagaactagccgagacaaaaacagcctgtacagaaattatccagctgccccctccccatagcc-nnnnnnnncaagc |
199 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43224772 |
gaacaacatgaaatcatgactgcaagaactagccgaaacaaaaacagcctgtacagaaattatccagctgccccctccccatagccaaaaaaaaacaagc |
43224673 |
T |
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| Q |
200 |
tattacaatcgccaggatcccaacatcactcgtaaaagagacaaggtgaccatttcaatctacacaaactctacttccatgacataaccttgatatcccc |
299 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224672 |
tattacaatcgccgggatcccaacatcactcataaaagagacaaggtgaccatttcaatctacacaaactctacttccatgacataaccttgatatcccc |
43224573 |
T |
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| Q |
300 |
aaaattctcattgatggtcacaattctactgtagaaaatcctatcatttctcacagtccaaaacacccaaatcattgtgt |
379 |
Q |
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|||| | |||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43224572 |
aaaaatttcattgatggtcacaattctacagttgaaaatcctatcatttctcacattccaaaacacccaaatcattgtgt |
43224493 |
T |
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