View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_low_27 (Length: 363)
Name: NF17162_low_27
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_27 |
 | |
|
| [»] scaffold0396 (1 HSPs) |
| | |
|
| [»] scaffold0717 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 71 - 345
Target Start/End: Complemental strand, 27805130 - 27804855
Alignment:
| Q |
71 |
ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg |
170 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||| ||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27805130 |
ctgatccaaattaaaccgcaaatatttggatcggatcgatttgaattttttttaatgtagtcatccaaatcgaaccgaaccgcatgtgatttttattttg |
27805031 |
T |
|
| Q |
171 |
gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagctatatcttacgaagtggtacaagaggtcggatcttcatgtaaa |
270 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27805030 |
gatcggatgacattttacttcaaaaccgatccaagccacatcgtgaacacccttagctatatcttacgaagtggtacaggaggtcggatcttcatgtaaa |
27804931 |
T |
|
| Q |
271 |
tgacctcatatccgttcaacaaaactacgcttac-aaaaatacatatgtctacaaagaataataatcttactaagt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27804930 |
tgacctcatatccgttcaacaaaactacgcttactaaaaatacatatgtctataaagaataataatcttactaagt |
27804855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 6345674 - 6345822
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
6345674 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
6345772 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
6345773 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
6345822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 37948673 - 37948525
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
37948673 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
37948575 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
37948574 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
37948525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 1265483 - 1265631
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
1265483 |
gatccaaattaaaccgcatatatttggatcggatcggttcagat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
1265581 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
1265582 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
1265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 3774202 - 3774347
Alignment:
| Q |
74 |
atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat |
173 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || |||| || |||||| |||| ||||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
3774202 |
atccaaattaaaccgcatatatttggatcggttcggttcggat--tttttagaatactcatccaaactgaaccgaattgcatgtgatttttattttggat |
3774299 |
T |
|
| Q |
174 |
tggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc |
221 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
3774300 |
cagttgacattttacctcaaaaccgatccaaaccacaccgtgaacacc |
3774347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 31126989 - 31126841
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
31126989 |
gatccaaattaaaccgcatatatttgggtcggatcggttcagat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
31126891 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
31126890 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
31126841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 43619768 - 43619620
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| ||| ||| ||| |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
43619768 |
gatccaaattaaaccgcatatatttgggtcgaatcggttcaaat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
43619670 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
43619669 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
43619620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 10182939 - 10182832
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| || ||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
10182939 |
gatccaaattaaaccgcatatatttgaatcggttcggttcaaat-ttttttaaaatagtcatccaaaccgaaccgaaccgcatgtgatttttattttgga |
10182841 |
T |
|
| Q |
173 |
ttggatgac |
181 |
Q |
| |
|
| ||||||| |
|
|
| T |
10182840 |
tcggatgac |
10182832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 4267743 - 4267891
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || |||| || |||| | |||| ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
4267743 |
gatccaaattaaaccgcatataattggatcggttcggttcggat-ttttctggaatactcatccaaactgaaccgaaccgcatgtgatttttattttgga |
4267841 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| || |||||| ||||||||||| ||||| |||||||| |
|
|
| T |
4267842 |
tcggttgacattttacctcaaaatcgatccaaaccgcaccgcgaacaccc |
4267891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 13471242 - 13471391
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||| | ||| ||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
13471242 |
gatccaaattaaaccgcatatatttggatcggatcggttcgaat-ttttttaacataattatctaaaccgaaccgaaccgcacgtgatttttattttgga |
13471340 |
T |
|
| Q |
173 |
ttggatga-catttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| ||| |||| |||| |||||||||||| |||| |||||||| |
|
|
| T |
13471341 |
tcggttgagttttttactttaaaatcgatccaaaccagaccgcgaacaccc |
13471391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 253335 - 253188
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || | || | ||||| ||| ||||| |||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
253335 |
gatccaaatataaccgcatatgtttggatcggatcagtttggat-tattttagaattgtcattcaaaccaaaccgaaccgcatgttatttttattttgga |
253237 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc |
221 |
Q |
| |
|
| ||||||||||| |||||||| || |||||||||||| ||||||| |
|
|
| T |
253236 |
tcggatgacatttggtctcaaaaccaattcaaaccacaccgggaacacc |
253188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 662523 - 662670
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || | || | ||||| ||| ||||| |||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
662523 |
gatccaaatataaccgcatatgtttggatcggatcagtttggat-tattttagaattgtcattcaaaccaaaccgaaccgcatgttatttttattttgga |
662621 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc |
221 |
Q |
| |
|
| ||||||||||| |||||||| || |||||||||||| ||||||| |
|
|
| T |
662622 |
tcggatgacatttggtctcaaaaccaattcaaaccacaccgggaacacc |
662670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 848321 - 848468
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || | || | ||||| ||| ||||| |||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
848321 |
gatccaaatataaccgcatatgtttggatcggatcagtttggat-tattttagaattgtcattcaaaccaaaccgaaccgcatgttatttttattttgga |
848419 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc |
221 |
Q |
| |
|
| ||||||||||| |||||||| || |||||||||||| ||||||| |
|
|
| T |
848420 |
tcggatgacatttggtctcaaaaccaattcaaaccacaccgggaacacc |
848468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 10636404 - 10636310
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacacc |
212 |
Q |
| |
|
||||||| |||||||||||| | ||||| |||||| ||||||||||||||| ||||||||||||||| || |||||| |||| ||||| ||||| |
|
|
| T |
10636404 |
ttttttagaatagtcatccacaccgaaccaaaccgcgtgtgatttttatttttgattggatgacattttacctcaaaatcgattcaaactacacc |
10636310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 15266349 - 15266451
Alignment:
| Q |
117 |
attttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtga |
216 |
Q |
| |
|
||||||||||||||||||||||| |||| || | | ||||||||||||||||| |||||||||| ||| | |||||| |||||||| || |||||||| |
|
|
| T |
15266349 |
attttttaaaatagtcatccaaaccgaattgtatcacatgtgatttttattttcaattggatgactttttgcctcaaaatcgatccaacccgcaccgtga |
15266448 |
T |
|
| Q |
217 |
aca |
219 |
Q |
| |
|
||| |
|
|
| T |
15266449 |
aca |
15266451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 4602999 - 4603147
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||| || |||||| |||| ||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
4602999 |
gatccaaaataaaccgcatatatttggatcggatcggatcggat-tttttttgaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga |
4603097 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || | || ||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
4603098 |
tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc |
4603147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 11863981 - 11864057
Alignment:
| Q |
147 |
gaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccct |
223 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||| || |||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
11863981 |
gaaccgcatgtaatttttattttggatcgattgacattttacctcaaaaccaatccaaaccgcaccgcgaacaccct |
11864057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 32907309 - 32907457
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||| || |||||| |||| ||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
32907309 |
gatccaaaataaaccgcatatatttggatcggatcggatcggat-ttttttttaataatcatccaaactgaaccgaaccgcgcatgatttttattttgga |
32907407 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || | || ||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
32907408 |
tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc |
32907457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 12522920 - 12522773
Alignment:
| Q |
74 |
atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat |
173 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| || || ||| |||||||||||||| || |||| ||| | | | ||||||||||||||||| |
|
|
| T |
12522920 |
atccaaattaaactgcatatatttggatcgaatcggatcagatttttattaaaatagtcatctaagccgaatcgaatcacttatgatttttattttggat |
12522821 |
T |
|
| Q |
174 |
tggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
|||||||| |||| |||||| |||| |||||| |||| |||||||| |
|
|
| T |
12522820 |
cggatgaca-ttaatctcaaaatcgattcaaaccgtaccgcgaacaccc |
12522773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 5327555 - 5327503
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg |
170 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| | ||| | |||||||||||| |
|
|
| T |
5327555 |
tttttttaaatagtcattcaaatcgaactgaatcacatataatttttattttg |
5327503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 26720886 - 26720846
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcg |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
26720886 |
gatccaaattaaaccgcatatatttggatcagatcgattcg |
26720846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 44902788 - 44902728
Alignment:
| Q |
154 |
atgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgt |
214 |
Q |
| |
|
|||||||||| |||||| || | |||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
44902788 |
atgtgattttaattttgaatcgaatgatattttgcttcaaaatcgatccaaaccacaccgt |
44902728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 9280302 - 9280456
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
9280302 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
9280400 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagct |
228 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
9280401 |
ttggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacacccctagct |
9280456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 34277336 - 34277485
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| || ||||| || ||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
34277336 |
gatccaaattaaacagcatatagttggatcggttcgattcgtatttttttagaaatactcatccaaaccgaaccgaaccgcatgtgatttttattttgga |
34277435 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| || |||||||||||||||||| ||||| |||||||| |
|
|
| T |
34277436 |
tcggttgacattttacctcaaaaccgatccaaaccgcaccgcgaacaccc |
34277485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 24574886 - 24574738
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||| | |
|
|
| T |
24574886 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcatgtgatttttattttgta |
24574788 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
24574787 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
24574738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 223
Target Start/End: Complemental strand, 42414276 - 42414128
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||| ||||||| |||| ||||||||| ||||| ||||||||||||||||||| |||| | |
|
|
| T |
42414276 |
gatccaaattaaaccgcatataattggatcggtttggttcgaat-ttttttagaatactcatccaaaccgaaccgaaccgcatgtgattttta-tttgaa |
42414179 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccct |
223 |
Q |
| |
|
| || |||||||| || |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42414178 |
tcggttgacattttacctcaaaaccgatccaaaccgcaccgcgaacaccct |
42414128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 7612418 - 7612568
Alignment:
| Q |
71 |
ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg |
170 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||| ||| || ||||||| ||||||||||| || |||| ||||||||||||||||||| |||| |
|
|
| T |
7612418 |
ctgatccaaattaaactgcatatatttggatctgatcagttcagat-ttttttagaatagtcatcccaacagaaccgaaccgcatgtgatttttactttg |
7612516 |
T |
|
| Q |
171 |
gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
|| ||||||||||| || |||||| |||||||||| |||| ||||||||| |
|
|
| T |
7612517 |
aatcggatgacattttacctcaaaattgatccaaaccgcaccatgaacaccc |
7612568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 24319436 - 24319575
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||| | |||||||| || | ||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
24319436 |
gatccaaattaaaccgcatatatttggatcggatcggttcaattattttttgaattt-tcatccaaaccggactgaaccgcgtgtgatttttattttgga |
24319534 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccg |
213 |
Q |
| |
|
| |||||||||| || | |||| ||||||||||| ||||| |
|
|
| T |
24319535 |
taagatgacattttacctaaaaatcgatccaaaccgcaccg |
24319575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 42430380 - 42430528
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| || ||| || ||||||| | || ||||||||| ||||| || |||||||| |||||||||||||| |
|
|
| T |
42430380 |
gatccaaattaaaccgcatatatttgtatcggttcggttcagat-ttttttagagtactcatccaaaccgaaccgatccgcatgtaatttttattttgga |
42430478 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| | |||||||||||||||||| ||||| |||||||| |
|
|
| T |
42430479 |
tgggttgacattttgcctcaaaaccgatccaaaccgcaccgcgaacaccc |
42430528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 23695637 - 23695515
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
23695637 |
gatccaaattaaaccgcatatatttggatcggat-----------ttttttagaatagtaatccaaaccgaactgaaccatatgtgatttttattttgga |
23695549 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaac |
206 |
Q |
| |
|
| ||||||||||| || |||||| | |||||||| |
|
|
| T |
23695548 |
tcggatgacattttacctcaaaatccatccaaac |
23695515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 3757336 - 3757468
Alignment:
| Q |
74 |
atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat |
173 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||| || || |||| |||| |||| |||| ||||| |||| |||||||||||||||||||||| |
|
|
| T |
3757336 |
atccaaattaaaccgcatatatttggatcggttcggttcagat-ttctttagaatactcattcaaaccgaaccgaacggcatgtgatttttattttggat |
3757434 |
T |
|
| Q |
174 |
tggatgacatttaacttcaaaaccgatccaaacc |
207 |
Q |
| |
|
|| |||||||| |||||||||||||||||| |
|
|
| T |
3757435 |
cggttgacattttgtctcaaaaccgatccaaacc |
3757468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 31567866 - 31567723
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||| ||||||||||| ||| |||| ||| |||| || |||||||||||||||| ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
31567866 |
gatccaaataaaaccgcatatatttagatcagattggttcggat-ttttttaaaatagtcacccaaa-----ctgaatcgcatgtaatttttattttgga |
31567773 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| ||||||||||| || || || |||||||||||||||| || ||||||| |
|
|
| T |
31567772 |
tcggatgacattttacctcgaagccgatccaaaccacactgtcaacaccc |
31567723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 47310381 - 47310469
Alignment:
| Q |
95 |
tttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacattt |
185 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
47310381 |
tttggatcggatcgattc--agattttttagaatagtcatccaaaccgaaccgaaccgcatgtgattcttattttagatcggatgacattt |
47310469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 46251668 - 46251520
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||| || ||||||| |||| |||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
46251668 |
gatccaaaataaaccgcatatatttggatcggatcggatcggat-ttttttagaataaccatccaaaccgaaccgaaccgcgcatgatttttattttgga |
46251570 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || | || ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
46251569 |
tcggttcactttttctctcaaaaccgatccaaaccggaccgtgaacaccc |
46251520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 47498575 - 47498427
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||| || ||||||| |||| ||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
47498575 |
gatccaaaataaaccgcatatatttggatcggatcggatcggat-ttttttagaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga |
47498477 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || | || ||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
47498476 |
tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc |
47498427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 47975364 - 47975226
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| || || | ||||| |||| ||||||||| | ||| |||||||||||||||||||||||||| |
|
|
| T |
47975364 |
gatccaaatcaaaccgcatatatttggatcagatcggatcagat-tcttttataataatcatccaaaccaaaccgaaccgcatgtgatttttattttgga |
47975266 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacacc |
212 |
Q |
| |
|
| ||||||| ||| || | ||||| ||||||||| |||| |
|
|
| T |
47975265 |
tcggatgactttttacctaaaaactaatccaaaccgcacc |
47975226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 40436790 - 40436937
Alignment:
| Q |
78 |
aaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaa-ccgcatgtgatttttattttggattgg |
176 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||| | ||||||| ||||||||| |||| |||| | || |||| |||| |||||| ||||||| || |
|
|
| T |
40436790 |
aaattaaatcgcatatatttggatcggatcggttcgatt-ttttttagaatagtcattcaaa-cgaaatcaaaccgcgtgtggtttttactttggatcgg |
40436887 |
T |
|
| Q |
177 |
atgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttag |
226 |
Q |
| |
|
||||||||| ||| |||| |||||||| || |||| ||| ||||||||| |
|
|
| T |
40436888 |
atgacattttgcttaaaaaacgatccaatccgcaccatgaccacccttag |
40436937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 7700661 - 7700726
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaa |
139 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||| ||||||||| |
|
|
| T |
7700661 |
gatccaaattaaaccgcatatatttggatcggattgattcgaat-ttttttaacataatcatccaaa |
7700726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 8738827 - 8738928
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| |||| | |||||| |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
8738827 |
gatccaaattaaaccgcatatatttgaatcggatcggttcggtt--tttttagaatagtcatccaaa---------accgcatgtaatttttattttgga |
8738915 |
T |
|
| Q |
173 |
ttggatgacattt |
185 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
8738916 |
ttgaatgacattt |
8738928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 1576221 - 1576369
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
1576221 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
1576319 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
1576320 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
1576369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 27392962 - 27393110
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
27392962 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
27393060 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| | ||| |||||| |||||||||||| ||||| |||| |||||||| |
|
|
| T |
27393061 |
tcgattgatttttaacctcaaaaccgatctaaaccggaccgcgaacaccc |
27393110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 36482381 - 36482233
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
36482381 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcatgtgatttttattttgga |
36482283 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| || | | ||||||||||||||||| |||| |||||||| |
|
|
| T |
36482282 |
tcggttgattatttgcctaaaaaccgatccaaaccagaccgcgaacaccc |
36482233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 8937495 - 8937355
Alignment:
| Q |
71 |
ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg |
170 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||| | ||| || ||||||| |||||| |||| || ||| |||||| ||||||||||||||||| |
|
|
| T |
8937495 |
ctgatccaaattaaactgcatatatttggatatgattagttcagat-ttttttagaatagtgatcccaacaaaaccgaaccgaatgtgatttttattttg |
8937397 |
T |
|
| Q |
171 |
gattggatgacatttaacttcaaaaccgatccaaaccacacc |
212 |
Q |
| |
|
||| ||||||||||| || ||||||| |||||||||| |||| |
|
|
| T |
8937396 |
gatcggatgacattttacctcaaaactgatccaaaccgcacc |
8937355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 29987677 - 29987573
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaa |
217 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||| | ||||||||| | |||||| || || ||| |
|
|
| T |
29987677 |
ttttttagaatagtcatccaaactgaactgaaccgtatgtgatttttattttggattggaagatatttttcctcaaaaccgtttcaaaccgcatcgcgaa |
29987578 |
T |
|
| Q |
218 |
caccc |
222 |
Q |
| |
|
||||| |
|
|
| T |
29987577 |
caccc |
29987573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 323311 - 323162
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||| || ||||||| |||| ||||||||| ||||| ||||||| | |||||||||||||| |
|
|
| T |
323311 |
gatccaaaataaaccgcatatatttggatcggatcggatcggattttttttagaataatcatccaaaccgaaccgaaccgcgcataatttttattttgga |
323212 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || | || ||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
323211 |
tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc |
323162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 31279892 - 31279729
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggat-caattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgg |
171 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | | |||| || ||||||| | || ||||||||| ||||| |||||||||| ||||||||||| | |
|
|
| T |
31279892 |
gatccaaattcaatcgcatatgtttggatcggtttcggttcggat-ttttttagagtactcatccaaaccgaacaaaaccgcatgtaatttttattttag |
31279794 |
T |
|
| Q |
172 |
attggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagctatatctta |
236 |
Q |
| |
|
|| || |||| || | ||||||||||| ||||| ||||| |||||||| || || ||||||| |
|
|
| T |
31279793 |
atcggttgacggtttgcctcaaaaccgattcaaactgcaccgcgaacacccctatctctatctta |
31279729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 36582234 - 36582091
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||| || ||||||| |||| |||| |||| ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
36582234 |
gatccaaattaaaacgcatatatttggatcgg-----ttctgat-ttttttagaatactcattcaaaccgaaccgaaccacatgtaatttttattttgga |
36582141 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||| ||| | | |||||||||| ||||| ||||| ||||||| |
|
|
| T |
36582140 |
tcggttgacgttttgccttaaaaccgatctaaaccgcaccgcaaacaccc |
36582091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 14242956 - 14242860
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggatt-ggatgacatttaacttcaaaaccgatccaaaccacaccg |
213 |
Q |
| |
|
||||||| |||| ||||||||| | ||||| ||| |||| |||||| ||||| | | ||||||| ||| || |||||||||||||||||| ||||| |
|
|
| T |
14242956 |
ttttttagaatattcatccaaaccaaactgcaccacatgcgattttaattttttaatcggatgactttttacatcaaaaccgatccaaaccccaccg |
14242860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 23222917 - 23222885
Alignment:
| Q |
74 |
atccaaattaaaccgcatatgtttggatcggat |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
23222917 |
atccaaattaaaccgcatatatttggatcggat |
23222885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 23226974 - 23226926
Alignment:
| Q |
157 |
tgatttttattttggattggatgacatttaacttc-aaaaccgatccaa |
204 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || ||||||||||||| |
|
|
| T |
23226974 |
tgatttttattttggatcggatgacattttacctcaaaaaccgatccaa |
23226926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 23236127 - 23236079
Alignment:
| Q |
157 |
tgatttttattttggattggatgacatttaacttc-aaaaccgatccaa |
204 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || ||||||||||||| |
|
|
| T |
23236127 |
tgatttttattttggatcggatgacattttacctcaaaaaccgatccaa |
23236079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 7608011 - 7607863
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
7608011 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
7607913 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
7607912 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
7607863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 16705093 - 16704945
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
16705093 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccaaaccgcacgtgatttttattttgga |
16704995 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
16704994 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
16704945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 10484107 - 10483978
Alignment:
| Q |
78 |
aaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattgga |
177 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | | ||||||| |||| ||||||||| ||||| | ||||||||||||||||| ||||||| |
|
|
| T |
10484107 |
aaattaaaccgcatatatttggatcggatcagtttaatttttttttagaatattcatccaaaccgaac-----cacatgtgatttttattttagattgga |
10484013 |
T |
|
| Q |
178 |
tgacatttaacttcaaaaccgatccaaaccacacc |
212 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||| |
|
|
| T |
10484012 |
tgacattttacctcaaaaccgatccaaaccgcacc |
10483978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 30395942 - 30396090
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| || || ||||||| |||| ||||||||| ||||| | |||| |||||||||||||||||| |
|
|
| T |
30395942 |
gatccaaattaaatcgcatatatttggatcggatcggatcagat-ttttttagaataatcatccaaaccgaaccaagccgcgtgtgatttttattttgga |
30396040 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||| ||| || |||||||||||||||||| |||| |||||||| |
|
|
| T |
30396041 |
tcggttgactttttacctcaaaaccgatccaaaccggaccgcgaacaccc |
30396090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 4463876 - 4463776
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaa |
217 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| |||||||||||||||||| ||| ||||||||||| ||||||| |||||||||| ||||| ||| |
|
|
| T |
4463876 |
ttttttagaatagtcatccaaaccaaactgaacagcatgtgatttttattttagatcggatgacattttttctcaaaacagatccaaaccgcaccgcgaa |
4463777 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
4463776 |
c |
4463776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 21947079 - 21947227
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||| ||| || ||||||| |||| ||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
21947079 |
gatccaaaataaaccgcatatatttggattggatcggatcggat-ttttttagaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga |
21947177 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
|||| | || ||| | |||||||||||||||| |||| |||||||| |
|
|
| T |
21947178 |
ttggttcacttttgctctaaaaaccgatccaaaccggaccgcgaacaccc |
21947227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 3900853 - 3900707
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||| || | | || ||| |||||||||||||| ||||| ||| | |||||||||||||||| || |
|
|
| T |
3900853 |
gatccaaattaaactgaatatatttggatcggatcggtttggct--ttcttagaatagtcatccaaaccgaaccgaatcacatgtgatttttatttcaga |
3900756 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacc |
221 |
Q |
| |
|
| ||| || ||| | ||||||||||| |||||| ||||||||||||| |
|
|
| T |
3900755 |
tcagataacgttttgcctcaaaaccgattcaaaccgcaccgtgaacacc |
3900707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 16110641 - 16110745
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaa |
217 |
Q |
| |
|
|||||||||||| ||||||||| | ||| |||||||| ||||||||||||||||| || | || ||| | |||||||||||||||| |||||||| |
|
|
| T |
16110641 |
ttttttaaaataatcatccaaaccaaaccgaaccgcacatgatttttattttggatcggttcactttttcatagaaaaccgatccaaaccggaccgtgaa |
16110740 |
T |
|
| Q |
218 |
caccc |
222 |
Q |
| |
|
||||| |
|
|
| T |
16110741 |
caccc |
16110745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 31945514 - 31945563
Alignment:
| Q |
175 |
ggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctt |
224 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
31945514 |
ggatgacttttaacctcaaaaccgaaacaaaccacaccgcgaacaccctt |
31945563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 37282375 - 37282223
Alignment:
| Q |
74 |
atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat |
173 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
37282375 |
atccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacatgatttttattttggat |
37282277 |
T |
|
| Q |
174 |
tggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagc |
227 |
Q |
| |
|
|| ||| |||||| |||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
37282276 |
cggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacacccctagc |
37282223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 19636274 - 19636126
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
19636274 |
gatccaaattaaaccgcatatatttggatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
19636176 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || | | ||| || |||||||||||||||| | |||| |||||||| |
|
|
| T |
19636175 |
tcggttaattttttacctcaaaaccgatccaaatcggaccgcgaacaccc |
19636126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 29283358 - 29283491
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || |||| || ||||||| |||||||||||||| |||| ||||| | |||||||||||||||||| |
|
|
| T |
29283358 |
gatccaaattaaaccgtttatatttggatcgggtcgattcatat-ttttttagaatagtcatccaaactgaaccgaaccacgtgtgatttttattttgga |
29283456 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaacc |
207 |
Q |
| |
|
| |||||| |||| || |||||||||||||||||| |
|
|
| T |
29283457 |
tcggatgatattttacctcaaaaccgatccaaacc |
29283491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 25393043 - 25393168
Alignment:
| Q |
77 |
caaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattgg |
176 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||||||||||| | ||||||| | ||||| ||||||||||||||||||||| || |
|
|
| T |
25393043 |
caaattaaaccgcatatatttggatcggatcaaat------ttttttaaaataattatccaaaccaaactg-----catgtgatttttattttggatcgg |
25393131 |
T |
|
| Q |
177 |
atgacatttaacttcaaaaccgatccaaaccacaccg |
213 |
Q |
| |
|
||||| ||| ||||||||| ||| |||||| ||||| |
|
|
| T |
25393132 |
atgactttttacttcaaaattgattcaaaccgcaccg |
25393168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 1030858 - 1030989
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaa-ttcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgg |
171 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||| || ||||||| || | ||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
1030858 |
gatccaaattaaaccgcatataattggatcggttttggttcggat-ttttttagaaaactcatctaaaccgaaccgaaccgcatgtgatttttattttgg |
1030956 |
T |
|
| Q |
172 |
attggatgacatttaacttcaaaaccgatccaa |
204 |
Q |
| |
|
|| || |||||||| | | ||||||||||||| |
|
|
| T |
1030957 |
atcggttgacattttatctaaaaaccgatccaa |
1030989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 25706671 - 25706820
Alignment:
| Q |
72 |
tgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgg |
171 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||| | ||| || ||||||| |||| ||||||||| ||||| |||||||| ||||||||||||| | |
|
|
| T |
25706671 |
tgatccaaaataaaccgcatatatttggaccggaccggatcggat-ttttttagaataatcatccaaaccgaaccgaaccgcacatgatttttattttag |
25706769 |
T |
|
| Q |
172 |
attggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
|| || | || ||| | |||||| ||||||||||| |||| |||||||| |
|
|
| T |
25706770 |
atcggttcacttttcccctcaaaatcgatccaaaccgaaccgcgaacaccc |
25706820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 27166977 - 27166889
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaac |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| || |||| ||||||||||| ||| |||| | |||| |||||||||||| ||||| |
|
|
| T |
27166977 |
ttttttaaaatagtcatccaaaccgaaccgaatcggatgtaatttttattttagatcggataatattttgtttcaaaaccgatacaaac |
27166889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 41198226 - 41198078
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||| |||| || ||| ||| |||| ||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
41198226 |
gatccaaattaaatcgcatatatttggatcagatcagttcggat-tttgttagaatactcatccaaaccgaaccgaaccgcatgtgatttttattttgga |
41198128 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| || |||||| |||||||||| ||||| |||||||| |
|
|
| T |
41198127 |
tcggttgacattttacctcaaaatcgatccaaactgcaccgcgaacaccc |
41198078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 14462079 - 14462227
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||| || |||||||| ||| ||||||||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
14462079 |
gatccaaattaaaccgcatatatttagatcggatcggttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtaatttttattttgga |
14462177 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
14462178 |
tcggttgatttttaacctcaaaaccgatccaaaccagaccgcaaacaccc |
14462227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 24615165 - 24615308
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || |||| || ||||||| |||| ||||||||| ||||| ||||||||||||||||||| || |
|
|
| T |
24615165 |
gatccaaattaaaccgcatatatttggatcggctcggttcggat-ttttttagaatactcatccaaaccgaac-----cgcatgtgatttttattttaga |
24615258 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| || ||||||||||||||||| |||| ||||||||| |
|
|
| T |
24615259 |
tcggttgacattttacctcaaaaccgatccaaactgcaccatgaacaccc |
24615308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 35671826 - 35671681
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| || |||| || ||||||| |||| |||| |||||||||| ||| ||||| ||||||||||||| || |
|
|
| T |
35671826 |
gatccaaattaaactgcatatatttggatcggttcggttcggat-ttttttagaatactcattcaaatcgaaccgaatcgcatatgatttttattttaga |
35671728 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaaca |
219 |
Q |
| |
|
| || |||||||| || ||||||| |||||||| | ||||| ||||| |
|
|
| T |
35671727 |
tcggttgacattttacctcaaaactgatccaaatcgcaccgcgaaca |
35671681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 28655955 - 28656087
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| ||| || ||||||| |||||||||| ||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
28655955 |
gatccaaattaaaccgcatatattttgatcggattggttctgat-ttttttagaatagtcatcaaaatcgaaccgaactgcatgtgatttttattttgaa |
28656053 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaac |
206 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||| |
|
|
| T |
28656054 |
tcggatgacattttgtctcaaaaccgattcaaac |
28656087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 5559762 - 5559915
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaata----ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattt |
168 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||| | |||||||| ||| ||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5559762 |
gatccaaattaaaccacatatatttggatcggatcggttcggttcggatttttttaacataatcatccaaatcgaaccgaaccgcacgtgatttttattt |
5559861 |
T |
|
| Q |
169 |
tggattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| ||| || ||| ||| || |||||||||||||||||| |||| |||||||| |
|
|
| T |
5559862 |
tagatcggttgatttttgacctcaaaaccgatccaaaccggaccgcgaacaccc |
5559915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 11619732 - 11619599
Alignment:
| Q |
74 |
atccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggat |
173 |
Q |
| |
|
||||||||||||||| |||| ||||||| | ||| ||| ||| ||||||||||||||| |||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
11619732 |
atccaaattaaaccgtatatatttggattgaatcggttc-aattttttttaaaatagtcgtccaaaccgaac-----cacatgtgatttttattttggat |
11619639 |
T |
|
| Q |
174 |
tggatgacatttaacttcaaaaccgatccaaaccacaccg |
213 |
Q |
| |
|
|||||||||| | ||||||| |||||||||| ||||| |
|
|
| T |
11619638 |
cggatgacattctgcctcaaaactgatccaaaccgcaccg |
11619599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 36851118 - 36851168
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattt |
168 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
36851118 |
ttttttaaaatagtcatccaaacttaactgaatcacatgtgatttttattt |
36851168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 38856216 - 38856258
Alignment:
| Q |
119 |
tttttaaaatagtcatccaaatcgaactgaaccgcatgtgatt |
161 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| ||||||||| |
|
|
| T |
38856216 |
tttttaatatagtcatccaaatcgaattgaaccacatgtgatt |
38856258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 535067 - 534983
Alignment:
| Q |
122 |
ttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaac |
206 |
Q |
| |
|
|||||| |||||||| || | ||||||| | | |||||||||||||| ||||||||||| ||| |||| |||| |||| ||||| |
|
|
| T |
535067 |
ttaaaacagtcatccgaaccaaactgaatcaaacgtgatttttattttagattggatgactttttactttaaaatcgatgcaaac |
534983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 71 - 222
Target Start/End: Original strand, 27111041 - 27111191
Alignment:
| Q |
71 |
ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg |
170 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || |||| || ||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
27111041 |
ctgatccaaattaaaccgcatataattggatcggttcggttcggat-ttttttagaatactcatccaaaccgaaccgaaccgtatgtgatttttattttg |
27111139 |
T |
|
| Q |
171 |
gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
||| || |||||||| || ||||||| |||||||||| ||||| ||||||| |
|
|
| T |
27111140 |
gatcggttgacattttacctcaaaactgatccaaaccgcaccgcaaacaccc |
27111191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 35449352 - 35449202
Alignment:
| Q |
77 |
caaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattgg |
176 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||| ||| ||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
35449352 |
caaattaaaccgcatatatttggatcggttcggttcaaat-tttttaaaaatactcatccaaaccgaaccgaaccgcatgtgatttttattttggatcgg |
35449254 |
T |
|
| Q |
177 |
atgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagct |
228 |
Q |
| |
|
|||||||| || ||||||| ||||||||| |||| |||||||| ||||| |
|
|
| T |
35449253 |
ttgacattttacctcaaaactaatccaaaccgcaccacgaacacccctagct |
35449202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 40044554 - 40044697
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |||||||| ||| |||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
40044554 |
gatccaaattaaaccgcatatatttggataggatcaattcagatattttt-aaattagtcatccaaaccgaac-----cgcatgtgatttttattttgga |
40044647 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| ||||||||||| | |||||| |||| |||||| ||||| |||||||| |
|
|
| T |
40044648 |
tcggatgacattttgcctcaaaatcgattcaaaccgcaccgcgaacaccc |
40044697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 40987717 - 40987865
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| ||| || |||||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
40987717 |
gatccaaattaaaccgcatatatttgggtcggatcggttcagat-ttttttaacataatcatccaaaccgaaccgaaccgcacgtgatttttattttgga |
40987815 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
40987816 |
tcggttgatttttaacctcaaaaccgatccaaaccggaccgcgaacaccc |
40987865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 1495596 - 1495448
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || || | || ||||||| |||| ||||||||| ||||| ||||| |||||||| ||||||| ||| |
|
|
| T |
1495596 |
gatccaaattaaaccgcatatatttggatcggttcggtttggat-ttttttagaatactcatccaaaccgaaccgaaccacatgtgatatttatttcgga |
1495498 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| || ||||||| |||||||||| |||| |||||||| |
|
|
| T |
1495497 |
tcggttgacattttacctcaaaactgatccaaaccggaccgcgaacaccc |
1495448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 17342186 - 17342039
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||| ||| ||||||| |||||||| ||||||| || |||||||||||||||||||||||||| |
|
|
| T |
17342186 |
gatccaaattaaaccgcatatattcggatcggataggttc-aat-ttttttagaatagtcaaccaaatcaaatcgaaccgcatgtgatttttattttgga |
17342089 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
||||| ||||||| ||||||| ||| ||| | |||||||||||||| |
|
|
| T |
17342088 |
ttggacgacattttgtctcaaaactaatctaaatcgcaccgtgaacaccc |
17342039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 41061621 - 41061768
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| || || || |||||||||||| ||||||||||||||| |||| |||||||||||||||||| | |
|
|
| T |
41061621 |
gatccaaattaaacagcatataattggatcggttcggatcagat-ttttttaaaatactcatccaaatcgaacc-aaccacatgtgatttttattttgaa |
41061718 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| || | |||||||||||||||| ||||| |||||||| |
|
|
| T |
41061719 |
tcggttgacattttaccttaaaaccgatccaaaccgcaccgcgaacaccc |
41061768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 33745972 - 33745832
Alignment:
| Q |
71 |
ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg |
170 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| | |||| || |||||| |||||||||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
33745972 |
ctgattcaaattaaaccgcatatatttggatcggtccgtttcggat--tttttagaatagtcatccaaactgaatcgaaccgcatgcgatttttattttg |
33745875 |
T |
|
| Q |
171 |
gattggatgacatttaacttcaaaaccgatccaaaccacaccg |
213 |
Q |
| |
|
|| ||||| |||| || |||||| |||| |||||| ||||| |
|
|
| T |
33745874 |
aatcagatgatattttacctcaaaatcgatgcaaaccgcaccg |
33745832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 42715834 - 42715745
Alignment:
| Q |
118 |
ttttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaacc |
207 |
Q |
| |
|
||||| |||||| ||||||||| ||| ||||||||||||| ||||||||| ||| || |||||||| | |||||||||||||||||| |
|
|
| T |
42715834 |
tttttaaaaataatcatccaaacaaaaccgaaccgcatgtgaattttattttagatcggttgacattttgcctcaaaaccgatccaaacc |
42715745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 26639927 - 26639796
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||| ||||||||| ||||| ||| ||||||||| || | |||||||| | |||||||||| ||| | || |||||||||| | ||||||||||| || |
|
|
| T |
26639927 |
gatcaaaattaaacttcatatatttagatcggatcggtttggatattttt-agaatagtcatctaaaccaaattgaaccgcatataatttttattttaga |
26639829 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaa |
205 |
Q |
| |
|
| |||||| |||| | |||||||||||||||| |
|
|
| T |
26639828 |
tcggatgatattttaactcaaaaccgatccaaa |
26639796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 4986485 - 4986623
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||| ||| ||| ||||||| |||| |||| |||| ||||| |||||||||| ||||||||||| || |
|
|
| T |
4986485 |
gatccaaattaaaccacatatatttggatttgattggttcaaat-ttttttagaataatcattcaaaccgaaccaaaccgcatgtaatttttattttaga |
4986583 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacacc |
212 |
Q |
| |
|
| | ||||||||| | |||||| |||| |||||| |||| |
|
|
| T |
4986584 |
tcgaatgacattttagctcaaaatcgattcaaaccgcacc |
4986623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 13555147 - 13555277
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||| |||||||||||||||| |||| | ||||| || |||| |||||||| ||| ||||||||| ||||| |||||||| | |||||||||||||| |
|
|
| T |
13555147 |
gatctaaattaaaccgcatatatttgaa--ggatcggtttgaat-ttttttaacataatcatccaaaccgaaccgaaccgcacataatttttattttgga |
13555243 |
T |
|
| Q |
173 |
ttggatgac-atttaacttcaaaaccgatccaaa |
205 |
Q |
| |
|
| || |||| ||| || |||||| ||||||||| |
|
|
| T |
13555244 |
tcggttgacttttttacctcaaaatcgatccaaa |
13555277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 21352028 - 21351877
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||| | || || | || ||||||| |||| |||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
21352028 |
gatccaaattaaaccgcatataattggatcagttctgtttggat-ttttttagaatattcatccaagccgaaccgaactgcatgtgatttttattttgga |
21351930 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctta |
225 |
Q |
| |
|
| || |||||||| || |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
21351929 |
tcggttgacattttacctcaaaaccgatccaaaccgcaccgcgaacaccctta |
21351877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 10997612 - 10997765
Alignment:
| Q |
71 |
ctgatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttg |
170 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||||| |||| | ||||||| |||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
10997612 |
ctgatccaaatttaactgcatatatttggatcggatcggttcggac-ttttttagaatagtcatccaaaccgaactgaactacatgtgatttttatttta |
10997710 |
T |
|
| Q |
171 |
gattggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctta |
225 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||| ||| | ||||||||||| |
|
|
| T |
10997711 |
gattggatgacattttgcctcaaaaccgattcaaaatgcactgcgaacaccctta |
10997765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 42295523 - 42295366
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||||||||| |||||| |||| || || || ||| || ||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
42295523 |
gatccaaattaaactgcatatatttgaattggctcggttcagat-ttttttataatactcatccaaaccgaaccgaaccacatgtgatttttattttgga |
42295425 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacacccttagctata |
231 |
Q |
| |
|
| || || ||||| || ||||||| |||||||||| |||||||||||||| ||| |||| |
|
|
| T |
42295424 |
tcggttggcattttacctcaaaactgatccaaaccgcaccgtgaacacccctagttata |
42295366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 29772585 - 29772735
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| || | || ||||||| |||||||||||||| |||| ||||||||| |||||||||||||| | |
|
|
| T |
29772585 |
gatccaaattaaaccgcatatatttggatcagatcagtttggat-ttttttagaatagtcatccaaaccgaatcgaaccgcatatgatttttattttgta |
29772683 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccctt |
224 |
Q |
| |
|
||| ||||| ||| | |||||| | ||| ||||| ||||| ||||| |||| |
|
|
| T |
29772684 |
ttgaatgactttttatctcaaaatcaatctaaaccgcaccgcgaacatcctt |
29772735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 22596730 - 22596867
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||||| |||||| |||| | ||||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
22596730 |
gatccaaattaaaccgcatatatttggatcggttcggttcgaat--tttttagaatacttatccaaaccgaactgaaccgcacataatttttattttaga |
22596827 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacacc |
212 |
Q |
| |
|
| || |||| ||| | |||||||||||||||||| |||| |
|
|
| T |
22596828 |
tcggttgacgttttgcctcaaaaccgatccaaaccgcacc |
22596867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 16672390 - 16672518
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||| || |||||||| ||| ||||||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
16672390 |
gatccaaattaaaccgcatatatttggattgg-----ttcggat-ttttttaacataatcatccaaaccgaaccgaaccgcacatgatttttattttgga |
16672483 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaacc |
207 |
Q |
| |
|
| || ||| |||||| |||||||||||||||||| |
|
|
| T |
16672484 |
taggttgatttttaacctcaaaaccgatccaaacc |
16672518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 18511950 - 18512098
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||| ||| || |||||| |||| ||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
18511950 |
gatccaaaataaaccgcatatatttggatcggatcggatcggat-tttttttgaataatcatccaaaccgaaccgaaccgcgcatgatttttattttgga |
18512048 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || | || ||| |||||||||||||||||| |||| |||||||| |
|
|
| T |
18512049 |
tcggttcacttttcctctcaaaaccgatccaaaccggaccgcgaacaccc |
18512098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 39989200 - 39989346
Alignment:
| Q |
75 |
tccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttggatt |
174 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| ||||||| ||||||| ||||| || |||| | ||| |||| | |||| ||||||||||| ||| |
|
|
| T |
39989200 |
tccaaattaaaccacatatatttggatcggatcggttcgaat-ttttttagtatagttattcaaaccaaaccgaactgtatgtaatttttattttaaatt |
39989298 |
T |
|
| Q |
175 |
ggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| ||||||||| | || ||||| |||| ||||| || || |||||||| |
|
|
| T |
39989299 |
gaatgacattttattttaaaactgatctaaaccgcagcgcgaacaccc |
39989346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 19968630 - 19968681
Alignment:
| Q |
156 |
gtgatttttattttggattggatgacatttaacttcaaaaccgatccaaacc |
207 |
Q |
| |
|
||||||||||||||||||||||| || ||| | |||||||||||||||||| |
|
|
| T |
19968630 |
gtgatttttattttggattggataactttttgcctcaaaaccgatccaaacc |
19968681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0396 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0396
Description:
Target: scaffold0396; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 994 - 846
Alignment:
| Q |
73 |
gatccaaattaaaccgcatatgtttggatcggatcaattcgaatattttttaaaatagtcatccaaatcgaactgaaccgcatgtgatttttattttgga |
172 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || ||| || ||||||| |||| ||||||||| ||||| |||| ||||||| | ||||||| ||| |
|
|
| T |
994 |
gatccaaattaaaccgcatatatttggattggttcggttctgat-ttttttagaatactcatccaaaccgaaccgaactgcatgtggtatttatttcgga |
896 |
T |
|
| Q |
173 |
ttggatgacatttaacttcaaaaccgatccaaaccacaccgtgaacaccc |
222 |
Q |
| |
|
| || |||||||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
895 |
tcggttgacattttacctcaaaaccgatccaaaccggaccgtgaacaccc |
846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 5955 - 6019
Alignment:
| Q |
142 |
gaactgaaccgcatgtgatttttattttggattggatgacatttaacttcaaaaccgatccaaac |
206 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||| |||| || |||||| ||||| |||| |
|
|
| T |
5955 |
gaactgaatcgcatgtgatttttattttagatcggatgatattttacctcaaaatcgatctaaac |
6019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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