View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_28 (Length: 356)
Name: NF17162_low_28
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_28 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 24257609 - 24257964
Alignment:
| Q |
1 |
ttgtgttgttttctaataacgaatttgggaactctcctcttagattccaaccagtcaaatccacagaagttagattgtattggtaaagaataaaatttgg |
100 |
Q |
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| T |
24257609 |
ttgtgttgttttctaataaccaatttgggaactctcctcttagtttacaaccagtgaaatccacataagttaaattgtattggtaaagaagaaagtttgg |
24257708 |
T |
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| Q |
101 |
aaatggaatggaatttgcctcagttgtagaagacaattgaagcacttgcaattgaaatttagggacccatgttttcatagttgtttgtgagtcaaggatg |
200 |
Q |
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| T |
24257709 |
aagtggaatggaattgaactcggttattgatgacaactgaagcacttgcaactgaaatttgggaacccatgttttcatagttgagtgtgagtcaaggatg |
24257808 |
T |
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| Q |
201 |
actttgttcccattaccatagatgaacttaaggtttgaatgattcgaaaattgtgtgaatgacatagggaattcaaattggtttccttcaaaacttagac |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| | ||| |
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| T |
24257809 |
actttgttcccattaccgtagatgaacttaaggtttgaatgattggaaaattgtgtgaatgaaatagggaattcgaattggtttccttcaaaattcagat |
24257908 |
T |
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| Q |
301 |
attcaagtgaagtaaaacttgcaaggttaggaccaatattaccaataaagtgatta |
356 |
Q |
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| T |
24257909 |
attcaagggaagtaaaacttgcaaggttaggaccaatattaccaataaagtgatta |
24257964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 24242851 - 24243206
Alignment:
| Q |
1 |
ttgtgttgttttctaataacgaatttgggaactctcctcttagattccaaccagtcaaatccacagaagttagattgtattggtaaagaataaaatttgg |
100 |
Q |
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|||||||||||||||||||| ||||||| || ||||| ||||| || |||||||| ||||| ||| ||| | |||||||||||||| | ||| ||||| |
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| T |
24242851 |
ttgtgttgttttctaataaccaatttggaaattctccacttagtttacaaccagtgaaatctacatcagtcaaattgtattggtaaaagagaaagtttgg |
24242950 |
T |
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| Q |
101 |
aaatggaatggaatttgcctcagttgtagaagacaattgaagcacttgcaattgaaatttagggacccatgttttcatagttgtttgtgagtcaaggatg |
200 |
Q |
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| T |
24242951 |
aagtggaatggaatttgccttagttgttgaagacaattgaagcacttgcaattgaaatttgggaacccatgtttccaaagttgagtgtaagtcaaggatg |
24243050 |
T |
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| Q |
201 |
actttgttcccattaccatagatgaacttaaggtttgaatgattcgaaaattgtgtgaatgacatagggaattcaaattggtttccttcaaaacttagac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| | ||| |
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| T |
24243051 |
actttgttcccattaccatagatgaacttaaggtttgaatgattggaaaattgtttgaatgaaatagggaattcaaattggtttccttcaaatttaagat |
24243150 |
T |
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| Q |
301 |
attcaagtgaagtaaaacttgcaaggttaggaccaatattaccaataaagtgatta |
356 |
Q |
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||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
24243151 |
attcaagggaagcaagacttgcaaggttaggaccaatattaccaataaagtgatta |
24243206 |
T |
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