View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_30 (Length: 353)
Name: NF17162_low_30
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_30 |
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| [»] scaffold0368 (2 HSPs) |
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Alignment Details
Target: scaffold0368 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 13335 - 13155
Alignment:
| Q |
13 |
gtgagatgaataaccaagtgtgttgtcttaggtcctcgttatgaatgtcgagactcagaaccatggatctgccgccgagttcagcgccgctggagttgaa |
112 |
Q |
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|||||| |||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13335 |
gtgagaagaataaccctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatggatctgccgccgagttcagcgccgctggagttgaa |
13236 |
T |
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| Q |
113 |
aagggaagaagcataagagtaagagcatgcatggctttaactttctgccggcgaggaataaatcagaggagtaaatggtggcgggtttccagt |
205 |
Q |
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| T |
13235 |
aagggaagaagcataagagtaaga------------ttaactttctgtcggcgagggataaatcagaggagtaaatggtggcgggtttccagt |
13155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0368; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 13101 - 13033
Alignment:
| Q |
262 |
aattcagagacaaattttgctttgttggaaaatgaagaagaaaaagtaacgtggaagacaaaatggtaa |
330 |
Q |
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| T |
13101 |
aattcagagataaattttgctttgttgaaaaatgaagaagaaaaaataatgtggaagacaaaatggtaa |
13033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 42837472 - 42837652
Alignment:
| Q |
13 |
gtgagatgaataaccaagtgtgttgtcttaggtcctcgttatgaatgtcgagactcagaaccatggatctgccgccgagttcagcgccgctggagttgaa |
112 |
Q |
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| T |
42837472 |
gtgagaagaataaccctgcgtgttgtgttaggtcctcgttatgaatgtcgagactcagagccatggatctgccgccgagttcagcgccgctggagttgaa |
42837571 |
T |
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| Q |
113 |
aagggaagaagcataagagtaagagcatgcatggctttaactttctgccggcgaggaataaatcagaggagtaaatggtggcgggtttccagt |
205 |
Q |
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| T |
42837572 |
aagggaagaagcataagagtaaga------------ttaactttctgtcggcgagggataaatcagaggagtaaatggtggcgggtttccagt |
42837652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 42837706 - 42837774
Alignment:
| Q |
262 |
aattcagagacaaattttgctttgttggaaaatgaagaagaaaaagtaacgtggaagacaaaatggtaa |
330 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
42837706 |
aattcagagataaattttgctttgttgaaaaatgaagaagaaaaaataatgtggaagacaaaatggtaa |
42837774 |
T |
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