View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_33 (Length: 339)
Name: NF17162_low_33
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_33 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 40544076 - 40544383
Alignment:
| Q |
19 |
gaaggatagggcaaatgcacatgatgttgttgataccaacttgtgcaactcctccttgtttcaattctattccaaacgtgtgttcaatcttgacataatc |
118 |
Q |
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| T |
40544076 |
gaaggacagggcagatgcacatgatgctgttaataccaacttgtgcaactcctccttgtttcaattctattccaaacgtgtgttaaatcttgacataatc |
40544175 |
T |
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| Q |
119 |
gagaccacttataatcgaactgagcttgcatccgtagccaatttgatttgtaactggatagatataaagactgtggattctcttattttcgttgtcatgg |
218 |
Q |
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| T |
40544176 |
gagaccacttatagtcgaactgagcttgcatccgtagccaatttgatccgtaactggatagatataaagactgtggattctcttattttcgttgtcatgg |
40544275 |
T |
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| Q |
219 |
accgtgcgcggaagtcattgcaagcaaggttgttagtccgtagatgttaggtgaacaacaccagtttagttgctagtcaatctttgtttaatgatgatta |
318 |
Q |
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| T |
40544276 |
accgtgtgcggaagtcattgcaagcaaggttattagtccgtagatgttgggtgaacaacaccagtttagctactagtcaatctttgtttaatgatgatta |
40544375 |
T |
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| Q |
319 |
tcatatct |
326 |
Q |
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|||||||| |
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| T |
40544376 |
tcatatct |
40544383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 276
Target Start/End: Complemental strand, 20807 - 20652
Alignment:
| Q |
120 |
agaccacttataatcgaactgagcttgcatccgtagccaatttgatttgtaactggatagatataaagactgtggattctcttattttcgttgtcatgga |
219 |
Q |
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| T |
20807 |
agaccacttatagtcgaactgagcttgcagccgttgccaatatgatccctaactggatagatataaa-attgtggattctctcattttcgctgtcatgga |
20709 |
T |
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| Q |
220 |
ccgtgcgcggaagtcattgcaagcaaggttgttagtccgtagatgttaggtgaacaa |
276 |
Q |
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| T |
20708 |
ccgtgtgcggaaaactttgcaagcaaggttgttagtctgtagatgttgggtgaacaa |
20652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 35407533 - 35407417
Alignment:
| Q |
108 |
ttgacataatcgagaccacttataatcgaactgagcttgcatccgtagccaatttgatttgtaactggatagatataaagactgtggattctcttatttt |
207 |
Q |
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||||||| || |||||||||| || ||||| | ||||||| | |||||||||||||| ||||||||||||||| ||||||||||||||||||| | || |
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| T |
35407533 |
ttgacattattgagaccacttgtagtcgaaacgtgcttgcagcagtagccaatttgatccgtaactggatagataaaaagactgtggattctcttttctt |
35407434 |
T |
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| Q |
208 |
cgttgtcatggaccgtg |
224 |
Q |
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| T |
35407433 |
cgttgtcatggatcgtg |
35407417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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