View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_34 (Length: 329)
Name: NF17162_low_34
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 40377845 - 40378148
Alignment:
| Q |
11 |
atcatcactacattgcatcacaaaaacattatttaccttattgggttctgcttcgagaatggcaacctactcttggtctatgatttcttatcaagaggaa |
110 |
Q |
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| T |
40377845 |
atcatcaccacattgcatcacaaaaacattatttccctcatcgggttctgcttcgagaatggcaatctactcttggtctatgatttcttatcaagaggaa |
40377944 |
T |
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| Q |
111 |
gccttgaagagaacattcacggtagacaaatataccttccaacactccctttggtttttctatgtgatcaaaattcaaataacatcatacttatttcttt |
210 |
Q |
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| T |
40377945 |
gccttgaagagaacattcatggtagacaaatataccttccaacactccctttagtttttctatgtgatcaaaattcaaataacatcatacttatttcttt |
40378044 |
T |
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| Q |
211 |
tccatgctaaattagggactaagaaaaaccctcgcgagtttggttggacacagagatataaggttgcaacaggcgttgctgaagctttggaatatctgca |
310 |
Q |
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| T |
40378045 |
tccatgctaaattagggactaagaaaaaccctcgcgagtttggttggacacagagatataaggttgcaacaggcgttgctgaagctttggaatatctgca |
40378144 |
T |
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| Q |
311 |
ttgt |
314 |
Q |
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|||| |
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| T |
40378145 |
ttgt |
40378148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 44155954 - 44155901
Alignment:
| Q |
83 |
ttggtctatgatttcttatcaagaggaagccttgaagagaacattcacggtaga |
136 |
Q |
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| T |
44155954 |
ttggtatatgattttttatcaagaggaagcctagaagaaaaccttcacggtaga |
44155901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 10259216 - 10259311
Alignment:
| Q |
23 |
ttgcatcacaaaaacattatttaccttattgggttctgcttcgagaatggcaacctactcttggtctatgatttcttatcaagaggaagccttgaa |
118 |
Q |
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| T |
10259216 |
ttgcatcacaaaaacatcatttctctcattggattctgctttgaagatgacaatcttcttttggtctatgatttcttatcaagagggagccttgaa |
10259311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 10259549 - 10259615
Alignment:
| Q |
245 |
cgagtttggttggacacagagatataaggttgcaacaggcgttgctgaagctttggaatatctgcat |
311 |
Q |
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| T |
10259549 |
cgagttaggttggactgagagatataaggtggcaatgggcgttgctgaggctttggagtatctgcat |
10259615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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