View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_4 (Length: 714)
Name: NF17162_low_4
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 5 - 700
Target Start/End: Original strand, 53673943 - 53674642
Alignment:
| Q |
5 |
catgtcgaagaatatccaactccataaggaattctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttttccattaca |
104 |
Q |
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| T |
53673943 |
catgtccaataatacccaactccataaggaattctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttctccattaca |
53674042 |
T |
|
| Q |
105 |
aagatcacctttgtatacctctgagtaccctcctcttccaactaaattatctattttcaaagaaaccaaaaatgaatgagtatattagaaacctcaattc |
204 |
Q |
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| T |
53674043 |
aagatcacctttgtatacttctgagtaccctcctcttccaactaaattatctattttcaaagaaacaaaaaatgaatgagtatattagaaacctcaattc |
53674142 |
T |
|
| Q |
205 |
aatgtttcatatgacattaaaaataagattaattatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaagcacttcaacaagg |
304 |
Q |
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| T |
53674143 |
aatgtttcatatgacattaaaaataacattaataatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaagcaattcaacaagg |
53674242 |
T |
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| Q |
305 |
gttgatgtttttcaattttggacatgttgaaggtttttattctgaatggtgaaccaagaaacgaaattatgaacctgaatgataattgtgattttctctt |
404 |
Q |
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| T |
53674243 |
gttgatgtttttcaattttggacatgttgaaggtttttattctgaatggtgaaccaagaaacgatattatgaacctgaatgataattgtgattttctctt |
53674342 |
T |
|
| Q |
405 |
aatcttaggaccagatgaaggtgtatatgtcatgcttgatgctctagtgctaaatgtgtcatcttctgtgctgttggattgtccctctagtagtccatct |
504 |
Q |
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| T |
53674343 |
aatcttaggaccagatgaaggtgtatatgtcaagcttgatgctctagtgctaaatgtgtcatcttctgtgctgttggattgtccctctagtagtccatct |
53674442 |
T |
|
| Q |
505 |
agaagtactgttctaggtgaactgttctgttgattcatttctgagataaaaaa----gaaaatagcaaggtacattatttttcagtaatttgatttgtat |
600 |
Q |
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| T |
53674443 |
agaagtactgttctaggtgaactgttctgttgattcatttctgagataaaaaaaaaggaaaatatcaaggtacattatttttcagtaatttgatttgtat |
53674542 |
T |
|
| Q |
601 |
tttgttaattaacattactttagaaaaattgaattaccttgaaaatctgttgaattgatattctgttctgtttttgtgctccttccaactgagacaattg |
700 |
Q |
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| T |
53674543 |
tttgttaattaacattactttagaaaaactgaattaccttgaaaatctgttgaattgatattctgttctgtttttgtgttccttccaactgagacaattg |
53674642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 53671329 - 53671451
Alignment:
| Q |
37 |
tctttttccttgtttggatctttgttgtctttggctaatctcttcacagcaatggtttttccattacaaagatcacctttgtatacctctgagta----- |
131 |
Q |
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| T |
53671329 |
tctttttccttgtttggatctttgttgtcttaggctaacctcttcacaacaatggtttctccattacaaagatcaccattgtataattctgagtaacctc |
53671428 |
T |
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| Q |
132 |
ccctcctcttccaactaaattat |
154 |
Q |
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| T |
53671429 |
ccctcctcttccaaccaaattat |
53671451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 53671717 - 53671842
Alignment:
| Q |
192 |
gaaacctcaattcaatgtttcatatgacatt-aaaaataagattaattatataccttggtgaaagtcattagtagcatttgatatattttcatagctgaa |
290 |
Q |
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||||| |||||||||||||| || ||| || |||||||| | | || ||| |||||||||| ||| ||| | |||||| || ||||||||| ||||||| |
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| T |
53671717 |
gaaacatcaattcaatgttttctacgaccttgaaaaataacactgatcataaaccttggtgacagtgatttgcagcattggaaatattttcacagctgaa |
53671816 |
T |
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| Q |
291 |
gcacttcaacaagggttgatgttttt |
316 |
Q |
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| T |
53671817 |
gcactatagcaaaggttgatgctttt |
53671842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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