View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_42 (Length: 294)
Name: NF17162_low_42
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 8446873 - 8447067
Alignment:
| Q |
94 |
ccaaatgccagcaacataagagttagaaatttgcatctctccctct--caaacatctggtgaaaaatttgcaacgacccacattttgcaatacatatcaa |
191 |
Q |
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| T |
8446873 |
ccaaatgccaacaacataagagttagaaatttgcatctctccctctctcaaacatctggtgaaaaatttgcaacgacccacattttgcaatacatatcaa |
8446972 |
T |
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| Q |
192 |
ccaaacaagttttgaccaaaacattataagcagatttgtagtcacacnnnnnnnaaacataagcgtgaatggaccttattcttccctttcatatc |
286 |
Q |
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| T |
8446973 |
ccaaacaagttttgaccaaaacattataagcagatttgtagtcacactttttttaaacataagcgtgaatggaccttattcttccctttcatatc |
8447067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 8446838 - 8446873
Alignment:
| Q |
18 |
atgaacagattacagattggttgtcgttcgctgttc |
53 |
Q |
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| T |
8446838 |
atgaacagattacagattggttgtcgttcgctgttc |
8446873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 19452129 - 19452187
Alignment:
| Q |
156 |
aatttgcaacgacccacattttgcaatacatatcaaccaaacaagttttgaccaaaacat |
215 |
Q |
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| T |
19452129 |
aatttccaacgatccacattta-caatacatatcaaccaaacaagtattaaccaaaacat |
19452187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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