View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_43 (Length: 284)
Name: NF17162_low_43
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 32808331 - 32808074
Alignment:
| Q |
17 |
atctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcg |
116 |
Q |
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| T |
32808331 |
atctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcg |
32808232 |
T |
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| Q |
117 |
gtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaattgagaactctgtctatgtttgataagaacaaggatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808231 |
gtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaattgagaactctgtctatgtttgataagaacaaggatt |
32808132 |
T |
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| Q |
217 |
tcttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32808131 |
tcttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcat |
32808074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 32825026 - 32824769
Alignment:
| Q |
17 |
atctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32825026 |
atctatctccaacctgttggtttcagtgttcatctttaatcttccagcaaggaagtcataagctactagagcatcttctaaagctttctttaacttctcg |
32824927 |
T |
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| Q |
117 |
gtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgttttcacatgaaaattgagaactctgtctatgtttgataagaacaaggatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| || ||||||| ||||||||||||| ||||| |
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| T |
32824926 |
gtcactatttgaggaggaaaatctttgtttgcttcgaagaaatgaaccgtttttacgtagaaattgagtaccttgtctatatttgataagaacatggatt |
32824827 |
T |
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| Q |
217 |
tcttttcgatttgttttgatgggaaaatcattgaagttttgtggattgtcaccttcat |
274 |
Q |
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| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32824826 |
tgttctcggtttgttttgatggaaaaatcattgaagttttgtggattgtcaccttcat |
32824769 |
T |
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