View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_low_45 (Length: 274)

Name: NF17162_low_45
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_low_45
NF17162_low_45
[»] chr5 (3 HSPs)
chr5 (17-258)||(4145450-4145692)
chr5 (54-171)||(39576028-39576145)
chr5 (57-141)||(39572052-39572136)
[»] chr1 (2 HSPs)
chr1 (48-199)||(46445633-46445784)
chr1 (55-138)||(46672390-46672473)
[»] chr8 (4 HSPs)
chr8 (57-199)||(9841626-9841768)
chr8 (55-171)||(9846691-9846805)
chr8 (59-131)||(9902656-9902728)
chr8 (59-125)||(9860349-9860415)
[»] chr3 (2 HSPs)
chr3 (54-125)||(7256556-7256627)
chr3 (54-139)||(49386066-49386151)
[»] chr6 (1 HSPs)
chr6 (56-126)||(112940-113010)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 4145692 - 4145450
Alignment:
Q  17 tttataaagtagtttccaacnnnnnnnccattcacgaggagcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaat 116  Q
    ||||||||||||||||||||       ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4145692 tttataaagtagtttccaacaaaaaaaccattcacgaggagcttcttttcaagctatctctttccatgagctatctactccaattctaagcacatagaat 4145593  T
Q  117 acataccaataagcacccgaaaccactaggatatctacaa-aaaacagcttgaattcagtagagtgaggaacacgtgctatagttacttgacacttatgt 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  4145592 acataccaataagcacccgaaaccactaggatatctacaaaaaaacagcttgaattcaatagagtgaggaacacgtgctatagttacttgacacttaagt 4145493  T
Q  216 tccgatcgtttcagtgaaatcggtaaagaaggaattttgagcc 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4145492 tccgatcgtttcagtgaaatcggtaaagaaggaattttgagcc 4145450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 39576145 - 39576028
Alignment:
Q  54 ggagcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaaccactaggatatcta 153  Q
    |||||||||||||||||||| |||||||| ||| |||| | ||||||||||||  ||||||| ||||||||| ||||||| ||||||||  ||||| |||    
T  39576145 ggagcttcttttctagctatttctttccacgagttatcaattccaattctaagtgcatagaaaacataccaaaaagcacctgaaaccacatggataacta 39576046  T
Q  154 caaaaaacagcttgaatt 171  Q
     | | |||| ||||||||    
T  39576045 gagagaacaacttgaatt 39576028  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 39572136 - 39572052
Alignment:
Q  57 gcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaacca 141  Q
    ||||||||||||||||| |||| ||||||| |||| ||||||||||| || |||||||| ||||||||| || |||| |||||||    
T  39572136 gcttcttttctagctatttcttaccatgagttatcaactccaattcttagaacatagaaaacataccaaaaaacacctgaaacca 39572052  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 46445784 - 46445633
Alignment:
Q  48 tcacgaggagcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaaccactagga 147  Q
    |||||||||||||||||||||||||| |||||||||||  |||||| ||||||||| | ||||||||| ||||||||| ||  |||||||| | | ||||    
T  46445784 tcacgaggagcttcttttctagctatctctttccatgaattatctattccaattcttaacacatagaaaacataccaaaaattacccgaaatctcaagga 46445685  T
Q  148 tatctacaaaaaacagcttgaattcagtagagtgaggaacacgtgctatagt 199  Q
     ||| | ||  |||| ||||||||  | || ||| |||||||||||||||||    
T  46445684 catccaaaaggaacaacttgaattttgcagtgtggggaacacgtgctatagt 46445633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 46672390 - 46672473
Alignment:
Q  55 gagcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaa 138  Q
    ||||||||||||||||||| |||||||||||  |||||| || |||||| ||||||||||| |||  |||| ||||||||||||    
T  46672390 gagcttcttttctagctatctctttccatgaattatctattctaattctcagcacatagaaaacacgccaaaaagcacccgaaa 46672473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 9841768 - 9841626
Alignment:
Q  57 gcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaaccactaggatatctacaa 156  Q
    ||||||||| ||||||| ||||||||||   |||||| ||| ||||| ||||||||||| ||||||||| |||||||||||||| | |||| ||||| ||    
T  9841768 gcttcttttttagctatctctttccatgcattatctattccgattctcagcacatagaaaacataccaacaagcacccgaaacctcaaggacatctataa 9841669  T
Q  157 aaaacagcttgaattcagtagagtgaggaacacgtgctatagt 199  Q
      || ||||||||||  | || | |||||||||||||||||||    
T  9841668 ggaaaagcttgaatttggaagtgcgaggaacacgtgctatagt 9841626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 9846805 - 9846691
Alignment:
Q  55 gagcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaaccactaggatatctac 154  Q
    ||||||||||||||| ||| |||||||||||| |||||| ||||||||| |||||  |||| ||||||||  ||||||| |||||||  |||| ||| ||    
T  9846805 gagcttcttttctagttatctctttccatgagttatctattccaattcttagcac--agaaaacataccagaaagcacctgaaaccatgaggacatccac 9846708  T
Q  155 aaaaaacagcttgaatt 171  Q
    ||  || ||||||||||    
T  9846707 aaggaaaagcttgaatt 9846691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 9902728 - 9902656
Alignment:
Q  59 ttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagca 131  Q
    ||||||||||||||| ||| |||||||| |||||| ||| ||||| |||| |||||| ||||||||| |||||    
T  9902728 ttcttttctagctatctctctccatgagttatctattccgattcttagcatatagaaaacataccaaaaagca 9902656  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 9860415 - 9860349
Alignment:
Q  59 ttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaa 125  Q
    |||||||||||||||  | |||||||| | ||||| |||||||||  |||||||||| |||||||||    
T  9860415 ttcttttctagctatcacgttccatgaaccatctattccaattctttgcacatagaaaacataccaa 9860349  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 7256627 - 7256556
Alignment:
Q  54 ggagcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaa 125  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| || |||||| | |||||||||    
T  7256627 ggagcttcttttctagctatttctttccatgagttatctactccaattcttagtacatagtaaacataccaa 7256556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 49386066 - 49386151
Alignment:
Q  54 ggagcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaataagcacccgaaac 139  Q
    ||||||||||||||| |||| |||||||||||| ||| || ||||||||| ||||||||||| ||||| ||  ||||||| |||||    
T  49386066 ggagcttcttttctacctatctctttccatgagttatgtattccaattcttagcacatagaaaacatatcagaaagcacctgaaac 49386151  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 112940 - 113010
Alignment:
Q  56 agcttcttttctagctatatctttccatgagctatctactccaattctaagcacatagaatacataccaat 126  Q
    ||||| |||||||||||| |||||||||| | |||| ||||||||| | || || ||||| ||||||||||    
T  112940 agctttttttctagctatctctttccatgtgttatcaactccaattgttaggacgtagaaaacataccaat 113010  T

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