View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_46 (Length: 265)
Name: NF17162_low_46
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_46 |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 31992063 - 31992314
Alignment:
| Q |
1 |
tcccatgattatattcatctcactgtcatcttccaaatgcatttatcggtgcactatttattctttaaccaacaaccatacattggaaaaaatgaacaat |
100 |
Q |
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| T |
31992063 |
tcccatgattatattcatctcgctgtcatcttccaaatgcatttatcggtgcactatttattctttaaccaacaaccatacattggaaaaaatgaacaat |
31992162 |
T |
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| Q |
101 |
tagaaagaacaatattaattagttttaagataattgtcatattttaatgcaagtgtcattctgatctgcactttattctgataagcaaattgaacaacta |
200 |
Q |
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| T |
31992163 |
tagaaagaacaatattaattagttttaagataattgtcatattttaatgcaagtgtcattctgatctgcactttattctgataagcaaattgaacaacta |
31992262 |
T |
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| Q |
201 |
aaatctgatcgattttcatatcatgatttattcttttatcttatattagttc |
252 |
Q |
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| T |
31992263 |
aaatctgatcgattttcatatcatgatttattcttttatcttatattagttc |
31992314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 20971465 - 20971532
Alignment:
| Q |
183 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
250 |
Q |
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| T |
20971465 |
aagcaaattgaacaactaaaatctgatcaattatcatatcatgatttattattttatcaaatattagt |
20971532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 20974044 - 20974098
Alignment:
| Q |
183 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattctttt |
237 |
Q |
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| T |
20974044 |
aagcaaattgagcaactaaattctgatcgattttcatatcttgatttattctttt |
20974098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 41405063 - 41405130
Alignment:
| Q |
183 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
250 |
Q |
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| T |
41405063 |
aagcaaattgaacaactaaaatcttatcaattttcatatcatgatttattattttatcaaatattagt |
41405130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 7315 - 7382
Alignment:
| Q |
183 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
250 |
Q |
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| T |
7315 |
aagcaaattgaacaactaaaatcttatcaattttcatatcatgatctattattttatcaaatattagt |
7382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 1118630 - 1118560
Alignment:
| Q |
77 |
catacattggaaaaaatgaacaattagaaagaacaatattaattagttttaagataattgtcatattttaat |
148 |
Q |
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| T |
1118630 |
catacattggaaaaaatggaaaattagaaggcacaatattaattagttttaaaat-agtgtcatattttaat |
1118560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 5768763 - 5768694
Alignment:
| Q |
101 |
tagaaagaacaatattaattagttttaagataattgtcatattttaatgcaagtgtcattctgatctgcac |
171 |
Q |
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| T |
5768763 |
tagaaagaacaatattaattagttttaa-agtatcgtcttattttaatttaagtgtcattttgctctgcac |
5768694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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