View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_51 (Length: 253)
Name: NF17162_low_51
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 54241699 - 54241927
Alignment:
| Q |
15 |
acaatgtactgaatatagaagacaacatgagcggctaatgatagaagcaaaagtcaatctctaaaaccgaatattctgagatgaagtggttttattgtag |
114 |
Q |
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| T |
54241699 |
acaatgtactgaatatagaagacaacatgagcggctaatgatagaagcaaaagtcaatctctaaaaccgaatattctgagatgaagtggttgtattgtag |
54241798 |
T |
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| Q |
115 |
tatttgagtgctactactaccttcaccaccaaatcaaatgaccaaacacactaactatcattgtcggtttgactttttaatgaaatcaaaataaaattta |
214 |
Q |
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| T |
54241799 |
tatttgagtgctactactaccttcaccaccaaatcaaatgaccaaacacactaactatcattgtcggtttgactttttaatgaaatcaaaataaaattta |
54241898 |
T |
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| Q |
215 |
gacacgcaataatacaagtagtgcctttg |
243 |
Q |
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| T |
54241899 |
gacacgcaataatacaagtagtgcctttg |
54241927 |
T |
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