View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_53 (Length: 251)
Name: NF17162_low_53
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_53 |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 28181120 - 28181022
Alignment:
| Q |
138 |
ataaaggaaatcatgttgaggttgccggtgaatggttctattctattctattcattggctggtttataattatgagaccaaaattggtgttattattgcc |
237 |
Q |
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| T |
28181120 |
ataaaggaaatcatgttgaggttgccggtgaatggttctattctattc-----attggctggtttataattatgagaccaaaattggtgttattattgcc |
28181026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 30165682 - 30165740
Alignment:
| Q |
183 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttg |
241 |
Q |
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| T |
30165682 |
ttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttg |
30165740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28181176 - 28181136
Alignment:
| Q |
1 |
aaaagagatcatgcattgaataactgagcaaggcagtggcc |
41 |
Q |
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| T |
28181176 |
aaaagagatcatgcattgaataactgagcaaggcagcggcc |
28181136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 30131151 - 30131096
Alignment:
| Q |
185 |
ctattcattggctggtttataattatgagaccaaaattggtgttattattgccttt |
240 |
Q |
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| T |
30131151 |
ctattcattggctggtttataattatgagacaagaagggatgttattatagccttt |
30131096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 30120151 - 30120095
Alignment:
| Q |
185 |
ctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttg |
241 |
Q |
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| T |
30120151 |
ctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttg |
30120095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 30125197 - 30125141
Alignment:
| Q |
185 |
ctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttg |
241 |
Q |
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||||||||||||||||| ||||| |||||||||| | | ||||||| ||||||||| |
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| T |
30125197 |
ctattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttg |
30125141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 238
Target Start/End: Complemental strand, 43164923 - 43164868
Alignment:
| Q |
183 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcct |
238 |
Q |
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| T |
43164923 |
ttctattcattggctggtttataattatgagactgaaatagatgttattattgcct |
43164868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 41311245 - 41311187
Alignment:
| Q |
183 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttg |
241 |
Q |
| |
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|||||||||||||||||||||| || || |||| |||| | ||||||||||||||||| |
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| T |
41311245 |
ttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttg |
41311187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 21425959 - 21426015
Alignment:
| Q |
113 |
gagcgtgtatcttccccaagaggtgataaaggaaatcatgttgaggttgccggtgaa |
169 |
Q |
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|||||||||||| || |||| ||||||||||||||| | |||||||||||||||| |
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| T |
21425959 |
gagcgtgtatctgcctgaagaagtgataaaggaaatccttctgaggttgccggtgaa |
21426015 |
T |
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