View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_low_54 (Length: 249)

Name: NF17162_low_54
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_low_54
NF17162_low_54
[»] chr8 (1 HSPs)
chr8 (1-234)||(10402699-10402932)
[»] chr6 (10 HSPs)
chr6 (43-234)||(20231985-20232176)
chr6 (43-234)||(22125969-22126160)
chr6 (41-128)||(18981109-18981196)
chr6 (41-126)||(20204741-20204826)
chr6 (41-126)||(22098764-22098849)
chr6 (41-125)||(20085421-20085505)
chr6 (41-112)||(24385890-24385961)
chr6 (43-126)||(21971304-21971387)
chr6 (41-95)||(18996952-18997006)
chr6 (41-127)||(22205653-22205739)
[»] scaffold0007 (1 HSPs)
scaffold0007 (41-128)||(6008-6095)
[»] scaffold0074 (1 HSPs)
scaffold0074 (41-128)||(48481-48568)
[»] scaffold0264 (1 HSPs)
scaffold0264 (41-127)||(15374-15460)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10402699 - 10402932
Alignment:
Q  1 ccttttggagaatgactaatgataccttggtcaatttctttgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccaccta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10402699 ccttttggagaatgactaatgataccttggtcaatttctttgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccaccta 10402798  T
Q  101 cacttcccaaataagaccaaggaattgcatttccaataatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10402799 cacttcccaaataagaccaaggaattgcatttccaataatatcactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgt 10402898  T
Q  201 ataaagtgtttgcaaatcattcaatttcaatgat 234  Q
    ||||||||||||||||||||||||||||||||||    
T  10402899 ataaagtgtttgcaaatcattcaatttcaatgat 10402932  T

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Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 20232176 - 20231985
Alignment:
Q  43 taaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattgcatttccaataatat 142  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||||||||| ||    
T  20232176 taaaattggaacaattcaaacctcaaattacaactaggatataaaactcttccaccaacacttcccaaataaggccaaggaattctatttccaataacat 20232077  T
Q  143 cactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgat 234  Q
    | | ||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  20232076 ctcccaaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgat 20231985  T

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Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 22126160 - 22125969
Alignment:
Q  43 taaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattgcatttccaataatat 142  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||||||||||| ||    
T  22126160 taaaattggaacaattcaaacctcaaattacaactaggatataaaactcttccaccaacacttcccaaataaggccaaggaattctatttccaataacat 22126061  T
Q  143 cactcaaacaagccttgcaatcatcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgat 234  Q
    | | ||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  22126060 ctcccaaacaacctttgcaatcatcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgat 22125969  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 18981109 - 18981196
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattgc 128  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| || |||||| || ||||| |||||||  ||||| ||||||||    
T  18981109 tgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaatttgaccatggaattgc 18981196  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 20204741 - 20204826
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaatt 126  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||| | |||||| || |||||||||||| | ||||| ||||||    
T  20204741 tgtaaaatttgaacaattcaaacctcagattgcagctaggatataagattcttcctccaacacttcccaaaaatgaccatggaatt 20204826  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 22098764 - 22098849
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaatt 126  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||| | |||||| || |||||||||||| | ||||| ||||||    
T  22098764 tgtaaaatttgaacaattcaaacctcagattgcagctaggatataagattcttcctccaacacttcccaaaaatgaccatggaatt 22098849  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 20085421 - 20085505
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaat 125  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| || |||||| || ||||| |||||||  ||||| |||||    
T  20085421 tgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaatttgaccatggaat 20085505  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 24385961 - 24385890
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaat 112  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| || |||||| || ||||| |||||||    
T  24385961 tgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcccccaacactacccaaat 24385890  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 21971304 - 21971387
Alignment:
Q  43 taaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaatt 126  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||  | |||||| || |||||||||||| | ||||| ||||||    
T  21971304 taaaatttgaacaattcaaacctcagattgcagctaggatatatgattcttcctccaacacttcccaaaaatgaccatggaatt 21971387  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 18996952 - 18997006
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttcc 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| || ||||||    
T  18996952 tgtaaaattggaacaattcaaacctcagattgcagctaggatatataattcttcc 18997006  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 22205739 - 22205653
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattg 127  Q
    |||||||  |||||||||||||||||| |||||| |||||||| | || |||||| || ||||| || ||||  ||||| |||||||    
T  22205739 tgtaaaaagggaacaattcaaacctcagattgcagctaggatagataattcttcccccaacactaccgaaatttgaccatggaattg 22205653  T

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Target: scaffold0007 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 6095 - 6008
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattgc 128  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| || ||| || || ||||| |||||||  ||||| ||||||||    
T  6095 tgtaaaattggaacaattcaaacctcagattgcagctaggatatataattctgcccccaacactacccaaatttgaccagggaattgc 6008  T

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Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 48568 - 48481
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattgc 128  Q
    |||||||  |||||||||||||||||| |||||| |||||||| | || |||||| || ||||| |||||||  ||||| ||||||||    
T  48568 tgtaaaaacggaacaattcaaacctcagattgcagctaggatagataattcttcccccaacactacccaaatttgaccatggaattgc 48481  T

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Target: scaffold0264 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 15374 - 15460
Alignment:
Q  41 tgtaaaattggaacaattcaaacctcatattgcaactaggatataaaactcttccacctacacttcccaaataagaccaaggaattg 127  Q
    |||||||  |||||||||||||||||| |||||| |||||||| | || |||||| || ||||| |||||||  ||||| |||||||    
T  15374 tgtaaaaagggaacaattcaaacctcagattgcagctaggatagataattcttcccccaacactacccaaatttgaccatggaattg 15460  T

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