View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_56 (Length: 247)
Name: NF17162_low_56
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 35269860 - 35269949
Alignment:
| Q |
1 |
atcaaagtagtggacaaagatcataagaaagaaaactgaatctcaatattgagattgtaacaaaatcaagaaagaaagcttgagaagcaa |
90 |
Q |
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| T |
35269860 |
atcaaagtagtggacaaagatcataacaaagaaaactgaatctcaatattgagattgtaacagaatcaagaaagaaagcttgagaagcaa |
35269949 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 9907919 - 9907967
Alignment:
| Q |
13 |
gacaaagatcataagaaagaaaactgaatctcaatattgagattgtaac |
61 |
Q |
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| T |
9907919 |
gacaaagatgatgagaaagaaaactgaatctcattgttgagattgtaac |
9907967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 35270066 - 35270096
Alignment:
| Q |
207 |
atcattcaaggtggatgccaaaccaggctct |
237 |
Q |
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| T |
35270066 |
atcattcaaggtggatgccaaaccaggctct |
35270096 |
T |
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