View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_low_57 (Length: 246)
Name: NF17162_low_57
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_57 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 2326054 - 2326272
Alignment:
| Q |
17 |
accaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2326054 |
accaccgtacccctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaa |
2326153 |
T |
|
| Q |
117 |
ctctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2326154 |
ctctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttca |
2326253 |
T |
|
| Q |
217 |
aaattcatctctctgctcc |
235 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
2326254 |
aaattcatctctcttctcc |
2326272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 2329793 - 2329971
Alignment:
| Q |
41 |
ccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta |
140 |
Q |
| |
|
|||||||| || || ||||||| |||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
2329793 |
ccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtccta |
2329892 |
T |
|
| Q |
141 |
tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
219 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329893 |
tcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaa |
2329971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 2320200 - 2320402
Alignment:
| Q |
17 |
accaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaa |
116 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2320200 |
accaccgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaa |
2320299 |
T |
|
| Q |
117 |
ctctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||| || |||||||||||| |||| ||||| ||||||||| ||||| | ||||||||| |
|
|
| T |
2320300 |
ctctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttca |
2320399 |
T |
|
| Q |
217 |
aaa |
219 |
Q |
| |
|
||| |
|
|
| T |
2320400 |
aaa |
2320402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 2292880 - 2293088
Alignment:
| Q |
17 |
accaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaa |
116 |
Q |
| |
|
|||||| |||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2292880 |
accaccatacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaa |
2292979 |
T |
|
| Q |
117 |
ctctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||| || |||||||||||| ||| ||||| | ||||||||||||| | ||||||||| |
|
|
| T |
2292980 |
ctctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttca |
2293079 |
T |
|
| Q |
217 |
aaattcatc |
225 |
Q |
| |
|
||| ||||| |
|
|
| T |
2293080 |
aaactcatc |
2293088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 2302499 - 2302701
Alignment:
| Q |
17 |
accaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaa |
116 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||||||||||||| ||| || ||| || | |||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2302499 |
accaccgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaa |
2302598 |
T |
|
| Q |
117 |
ctctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | ||||| || |||||||||||| |||| |||| ||||||||||||||| | ||||||||| |
|
|
| T |
2302599 |
ctctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttca |
2302698 |
T |
|
| Q |
217 |
aaa |
219 |
Q |
| |
|
||| |
|
|
| T |
2302699 |
aaa |
2302701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 2309211 - 2309413
Alignment:
| Q |
17 |
accaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaa |
116 |
Q |
| |
|
||||| ||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2309211 |
accactgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaa |
2309310 |
T |
|
| Q |
117 |
ctctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||| || ||||||||||| |||| ||||| ||||||||| ||||| | ||||||||| |
|
|
| T |
2309311 |
ctctccatgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttca |
2309410 |
T |
|
| Q |
217 |
aaa |
219 |
Q |
| |
|
||| |
|
|
| T |
2309411 |
aaa |
2309413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 2350069 - 2350271
Alignment:
| Q |
17 |
accaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaa |
116 |
Q |
| |
|
||||||| | ||||||||||| | ||||| || |||||||| |||| ||| || | ||||||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
2350069 |
accaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaa |
2350168 |
T |
|
| Q |
117 |
ctctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttca |
216 |
Q |
| |
|
| ||||| ||||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
2350169 |
ccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttca |
2350268 |
T |
|
| Q |
217 |
aaa |
219 |
Q |
| |
|
||| |
|
|
| T |
2350269 |
aaa |
2350271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University