View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_63 (Length: 231)
Name: NF17162_low_63
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_63 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 6392045 - 6391802
Alignment:
| Q |
4 |
tagtgaactgggaaatccctattgtaagttaatcaccttaatggtggcagcatctgttgcagatggtttcaaatacaat---------------aagatg |
88 |
Q |
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| T |
6392045 |
tagtgaactaggaaattgctattgtaaactaatcaccttaatggtggcagcatccgttgcagatggtttcaaatccaaagcaataccataatgaaacatg |
6391946 |
T |
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| Q |
89 |
-ctctatcatgcatgttacgccttttatagataattcccgtcaaagcaaatacactactttcgaagggagcgtactctttaagctcgtataggacttcta |
187 |
Q |
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| T |
6391945 |
gctctctcatgcatgttacgccttttatagatattgcccatcaaagcaaagacactactttcgaagggagcgtactctttaagctcgtctaggacttcta |
6391846 |
T |
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| Q |
188 |
aagccttgtcaaacctttccaggctcattagtatgttggccttt |
231 |
Q |
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| T |
6391845 |
aagcctcgtcaaacctttccaggctcattagaatgttggccttt |
6391802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 6425666 - 6425534
Alignment:
| Q |
99 |
catgttacgccttttatagataattcccgtcaaagcaaatacactactttcgaagggagcgtactctttaagctcgtataggacttctaaagccttgtca |
198 |
Q |
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| T |
6425666 |
catgttacgccttttatagataattcccgtcaaagcaaatacactactttcgaagggagcgtactctttaagctcgtataggacttctaaagcctctcca |
6425567 |
T |
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| Q |
199 |
aacctttccaggctcattagtatgttggccttt |
231 |
Q |
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| T |
6425566 |
aacctttccaggctcattaatatgttgtccttt |
6425534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 6425300 - 6425169
Alignment:
| Q |
96 |
atgcatgttacgccttttatagataattcccgtcaaagcaaatacactactttcgaagggagcgtactctttaagctcgtataggacttctaaagccttg |
195 |
Q |
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| T |
6425300 |
atgcatgttacaccttttatagatatttcccatcaatgcaaagacgttaccttcaaagggagcgtac-cttta---tcaactaggacttctaaagcctcg |
6425205 |
T |
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| Q |
196 |
tcaaacctttccaggctcattagtatgttggccttt |
231 |
Q |
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| T |
6425204 |
tcaagcctttcctggctcattagtatgccggccttt |
6425169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 6418266 - 6418409
Alignment:
| Q |
87 |
tgctctatcatgcatgttacgccttttatagataattcccgtcaaagcaaatacactactttcgaagggagcgtactctttaagctcgtataggacttct |
186 |
Q |
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|||||| |||||||||||||||||||||||||| ||||| ||||||| | |||||| ||||| |||||| |||||||||||||| | ||||||||| |
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| T |
6418266 |
tgctctctcatgcatgttacgccttttatagatccttcccatcaaagcgtagacactaatttcgcggggagcatactctttaagctcctctaggacttcc |
6418365 |
T |
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| Q |
187 |
aaagccttgtcaaacctttccaggctcattagtatgttggcctt |
230 |
Q |
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| T |
6418366 |
aaagcctcatcgaatttttccaagctcattagtatattggcctt |
6418409 |
T |
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