View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17162_low_64 (Length: 229)
Name: NF17162_low_64
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_64 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 22363083 - 22363228
Alignment:
| Q |
1 |
actttgctacccctgcatccaagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagctttaaaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363083 |
actttgctacccctgcatccaagttgaaaatttcactctaaatttctctaatgacttgatgttcacttgttgcttcaaggcaatagaagctttaaaattg |
22363182 |
T |
|
| Q |
101 |
tgatgttaaattttgagaagaaaaaatatactaaattgagtcacac |
146 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
22363183 |
tgatgttaaattttgagaagtaaaaaaatactaaattgagtcacac |
22363228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 22363245 - 22363327
Alignment:
| Q |
131 |
ctaaattgagtcacacaaaaatgcatattaactcttcatactttaggcgtagttccttgtattctctagttctacgaagaaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
22363245 |
ctaaattgagtcacacaaaaatgcatattaactcttcatactttaggcctagttccttgtattctctagttctatgaagaaca |
22363327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University