View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17162_low_66 (Length: 227)

Name: NF17162_low_66
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17162_low_66
NF17162_low_66
[»] chr4 (2 HSPs)
chr4 (92-227)||(20302289-20302424)
chr4 (5-95)||(20302445-20302535)
[»] chr5 (13 HSPs)
chr5 (92-207)||(30716331-30716446)
chr5 (92-207)||(30056959-30057074)
chr5 (92-207)||(30680153-30680268)
chr5 (92-200)||(30480615-30480723)
chr5 (120-207)||(30746455-30746542)
chr5 (175-227)||(30433200-30433252)
chr5 (174-225)||(30204061-30204112)
chr5 (92-147)||(30433150-30433205)
chr5 (5-95)||(30480504-30480594)
chr5 (1-55)||(30680329-30680383)
chr5 (1-55)||(30056844-30056898)
chr5 (5-55)||(30433039-30433089)
chr5 (9-55)||(30716507-30716553)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 20302424 - 20302289
Alignment:
Q  92 gttatcaaataaaacggttgatttctcattcatatcagccaaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaa 191  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  20302424 gttatcaaataaaatggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcagctgaagcatcctcttgctttcaggaa 20302325  T
Q  192 aagcagtggacacaacttgatcaattaacattgtcc 227  Q
    |||||||||||||||||||||||||||| |||||||    
T  20302324 aagcagtggacacaacttgatcaattaatattgtcc 20302289  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 20302535 - 20302445
Alignment:
Q  5 aagagaaataatagtcacctgttcagtttcacaagagatgctctctgtaaggtgcatgaccgatgctaatctacaaaaatacatggagtta 95  Q
    |||||||||||  | ||||||||| ||| |||| |||||||||||||||||    |||||  |||||||| ||| |||||| |||||||||    
T  20302535 aagagaaataaatggcacctgttcggttacacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatatatggagtta 20302445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 30716446 - 30716331
Alignment:
Q  92 gttatcaaataaaacggttgatttctcattcatatcagccaaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaa 191  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||||||| |||||    
T  30716446 gttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagattctgtggttcagctgaagcatcctcttgctttcaggaa 30716347  T
Q  192 aagcagtggacacaac 207  Q
    ||||||||||||||||    
T  30716346 aagcagtggacacaac 30716331  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 30056959 - 30057074
Alignment:
Q  92 gttatcaaataaaacggttgatttctcattcatatcagccaaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaa 191  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||    
T  30056959 gttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtttagctgaagcatcctcttgctttcaggaa 30057058  T
Q  192 aagcagtggacacaac 207  Q
    || |||||||||||||    
T  30057059 aaacagtggacacaac 30057074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 30680268 - 30680153
Alignment:
Q  92 gttatcaaataaaacggttgatttctcattcatatcagccaaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaa 191  Q
    |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| || ||    
T  30680268 gttatcaaattaaacggttgatttctcattgatatcatccaaaatcatcacctcttatagtttctgtggttcagctgaagtatcctcttgctttcagcaa 30680169  T
Q  192 aagcagtggacacaac 207  Q
    ||||||||||||||||    
T  30680168 aagcagtggacacaac 30680153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 30480615 - 30480723
Alignment:
Q  92 gttatcaaataaaacggttgatttctcattcatatcagccaaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaa 191  Q
    |||||||||||||||  |||||||||||||||||||| || |||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  30480615 gttatcaaataaaacatttgatttctcattcatatcatccgaaattatcacctcttatagtttctgtggttcagctgaagcatcctcttgctttcaggaa 30480714  T
Q  192 aagcagtgg 200  Q
    |||||||||    
T  30480715 aagcagtgg 30480723  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 30746455 - 30746542
Alignment:
Q  120 ttcatatcagccaaaatcatcacctcttatactttctgtagttcagctgaagcatcctcttgctttaaggaaaagcagtggacacaac 207  Q
    ||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  30746455 ttcatatcatccaaaatcatcaccttttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaac 30746542  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 30433200 - 30433252
Alignment:
Q  175 cctcttgctttaaggaaaagcagtggacacaacttgatcaattaacattgtcc 227  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  30433200 cctcttgctttcaggagaagcagtggacacaacttgatcaattaacattgtcc 30433252  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 30204061 - 30204112
Alignment:
Q  174 tcctcttgctttaaggaaaagcagtggacacaacttgatcaattaacattgt 225  Q
    |||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  30204061 tcctcttgctttcagaaaaagcagtggacataacttgatcaattaacattgt 30204112  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 30433150 - 30433205
Alignment:
Q  92 gttatcaaataaaacggttgatttctcattcatatcagccaaaatcatcacctctt 147  Q
    ||||||||||||||| ||||||||||  ||||||||| ||||||||||||||||||    
T  30433150 gttatcaaataaaacagttgatttcttgttcatatcatccaaaatcatcacctctt 30433205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 30480504 - 30480594
Alignment:
Q  5 aagagaaataatagtcacctgttcagtttcacaagagatgctctctgtaaggtgcatgaccgatgctaatctacaaaaatacatggagtta 95  Q
    |||||||||||  | | |||||||||||||||| |||||||||||||||||    |||||  |||||||||||| |||||| |||||||||    
T  30480504 aagagaaataaatggctcctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatctactaaaatatatggagtta 30480594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30680383 - 30680329
Alignment:
Q  1 ttcgaagagaaataatagtcacctgttcagtttcacaagagatgctctctgtaag 55  Q
    ||||||| |||||||  |||||||||||||||||||| |||||||||||||||||    
T  30680383 ttcgaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaag 30680329  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30056844 - 30056898
Alignment:
Q  1 ttcgaagagaaataatagtcacctgttcagtttcacaagagatgctctctgtaag 55  Q
    ||||||| |||||||  |||||||||||||||||| | |||||||||||||||||    
T  30056844 ttcgaagcgaaataagtgtcacctgttcagtttcataggagatgctctctgtaag 30056898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 30433039 - 30433089
Alignment:
Q  5 aagagaaataatagtcacctgttcagtttcacaagagatgctctctgtaag 55  Q
    |||||||||||  | |||||||||||||||||| |||||||||||||||||    
T  30433039 aagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaag 30433089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 30716553 - 30716507
Alignment:
Q  9 gaaataatagtcacctgttcagtttcacaagagatgctctctgtaag 55  Q
    |||||||  |||||||||||||||||||| |||||||||||||||||    
T  30716553 gaaataagtgtcacctgttcagtttcacaggagatgctctctgtaag 30716507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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