View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17162_low_67 (Length: 226)
Name: NF17162_low_67
Description: NF17162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17162_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 27356477 - 27356674
Alignment:
| Q |
17 |
agtaacaagaaccaataattggtggacttgcaattctcatgtgaacttcttttgcacctgcttccttgagcaacctcacaatcttggacgatgttgttcc |
116 |
Q |
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| T |
27356477 |
agtaacaagaaccaataattggtggacttgcaattctcatgtgaacttcttttgcacctgcttccttaagcaacctcacaatcttggacgatgttgttcc |
27356576 |
T |
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| Q |
117 |
cctcacaattgagtcatcaacgacaacaacccttttaccttcaagcacagcacgaacaggcgaaagcttcaacttcacaccaaaatccctaattttct |
214 |
Q |
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| T |
27356577 |
cctcacaattgagtcatcaacgacaacaacccttttaccttcaagcacagcacgaacaggcgaaagcttcaacttcacaccaaaatccctaattttct |
27356674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 55060294 - 55060489
Alignment:
| Q |
19 |
taacaagaaccaataattggtggacttgcaattctcatgtgaacttcttttgcacctgcttccttgagcaacctcacaatcttggacgatgttgttcccc |
118 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||||| || | ||||||| |||| || || ||||||||||| | |
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| T |
55060294 |
taacaagaaccaataattggtggacatgcaatcctcatgtgaacttctttagcatcagcttcttttaacaacctcgcaattttagatgatgttgttcctc |
55060393 |
T |
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| Q |
119 |
tcacaattgagtcatcaacgacaacaacccttttaccttcaagcacagcacgaacaggcgaaagcttcaacttcacaccaaaatccctaattttct |
214 |
Q |
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|||||||||| |||||||| || ||||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
55060394 |
tcacaattgaatcatcaacaaccacaacccttttctcttcaagaacaacacgaaccggcgaaagcttcaacttcacaccaaaatctctaatcttct |
55060489 |
T |
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