View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17163_high_1 (Length: 573)
Name: NF17163_high_1
Description: NF17163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17163_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 15 - 563
Target Start/End: Complemental strand, 13394873 - 13394323
Alignment:
| Q |
15 |
tcagacacaagttaagtagt--tatttaaacttttaaaacattaaatctacaatttttgataaaatatttctatctcttgcatttatcttagaaaaaata |
112 |
Q |
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| T |
13394873 |
tcagacacaagttaagtagtgttatttaaacttttaaaacattaaatatacaattttttataaaatatttctatctcttgcatttatcttagaaaaaata |
13394774 |
T |
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| Q |
113 |
tggttttaagatcgatgatggaaaaatccattaatatatttctgaaaggtgacgaacgactcctattgaaaattcaacaaattgggcaacaatatagaat |
212 |
Q |
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| T |
13394773 |
tggttttaagatcgaggatggaaaaatccattaatatatttctgaaaggtgacaaacgactcctattgaaaattcaacaaattgggcaacaatatagaat |
13394674 |
T |
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| Q |
213 |
ccaaatttaagtgatgatccaaatattacgtgactataaccatcacatacatattttattttatattttgcctttgaaaatcatttacatatattataga |
312 |
Q |
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| T |
13394673 |
ccaaatttaagtgatggtccaaatattacgtgactataaccatcacacacatattttattttctattttgccgttgaaaatcatttacatatattataga |
13394574 |
T |
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| Q |
313 |
gactaaaacttaatcatagaacacaaaaagtattttttatgaacacgaccaacacaaaacaaagttatcttaaactaatcattcatggataaaatggtaa |
412 |
Q |
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| T |
13394573 |
gactaaaacttaatcatagaacacaaaaagtattttttatgaacacgaccaacacaaaacaaagttatcttaaactaatcattcatggataaaatggtaa |
13394474 |
T |
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| Q |
413 |
tataaaaatgattgggtgatagagaagtaattgtaaattaaaagtattgtaatttttgcatttgtttcttgtttctcnnnnnnnnnnnnnnnnttttaca |
512 |
Q |
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| T |
13394473 |
tataaaaatgattgggtgatagagaagtaattgtaaattaaaagtattgtaatttttgcatttgtttcttgtttctcaaaacaaaaaacaaaattttaca |
13394374 |
T |
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| Q |
513 |
ggggtgatgcaattttgtaaatgtaggatgcaattttgtaatattcttgga |
563 |
Q |
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| T |
13394373 |
ggggtgatgcaattttgtaaatataggatgcaattttgtaatatttttgga |
13394323 |
T |
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