View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17163_high_3 (Length: 398)

Name: NF17163_high_3
Description: NF17163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17163_high_3
NF17163_high_3
[»] chr4 (38 HSPs)
chr4 (20-384)||(41915300-41915667)
chr4 (229-373)||(11172574-11172717)
chr4 (240-368)||(45064895-45065023)
chr4 (230-373)||(568023-568166)
chr4 (244-353)||(14606273-14606382)
chr4 (244-373)||(30266676-30266805)
chr4 (244-373)||(30285383-30285512)
chr4 (321-382)||(31416249-31416310)
chr4 (225-370)||(37107036-37107181)
chr4 (286-370)||(48459171-48459255)
chr4 (224-370)||(7608593-7608739)
chr4 (286-370)||(6382600-6382684)
chr4 (230-382)||(10574763-10574915)
chr4 (286-370)||(15987555-15987639)
chr4 (225-373)||(21544180-21544328)
chr4 (286-370)||(31918886-31918970)
chr4 (224-352)||(32596524-32596651)
chr4 (230-353)||(5902957-5903080)
chr4 (286-353)||(44887591-44887658)
chr4 (230-340)||(36918694-36918804)
chr4 (320-373)||(30672668-30672721)
chr4 (286-370)||(4766641-4766725)
chr4 (230-370)||(11027701-11027841)
chr4 (286-370)||(26564516-26564600)
chr4 (286-370)||(44317229-44317313)
chr4 (224-370)||(55826949-55827095)
chr4 (291-352)||(29527476-29527537)
chr4 (286-370)||(11123193-11123277)
chr4 (291-371)||(31782284-31782364)
chr4 (291-370)||(39046647-39046726)
chr4 (230-349)||(47103345-47103464)
chr4 (302-353)||(47239728-47239779)
chr4 (286-341)||(47550708-47550763)
chr4 (319-373)||(18423286-18423340)
chr4 (291-384)||(9229972-9230065)
chr4 (225-350)||(16217014-16217139)
chr4 (320-353)||(43892230-43892263)
chr4 (314-370)||(13015726-13015782)
[»] chr5 (27 HSPs)
chr5 (230-373)||(23045336-23045479)
chr5 (231-373)||(12712849-12712990)
chr5 (231-373)||(12774113-12774254)
chr5 (224-370)||(15889828-15889974)
chr5 (283-373)||(34258905-34258995)
chr5 (223-351)||(20973830-20973958)
chr5 (230-372)||(10833796-10833938)
chr5 (225-373)||(12250567-12250715)
chr5 (230-353)||(6093448-6093571)
chr5 (291-370)||(13402329-13402408)
chr5 (230-353)||(40517430-40517553)
chr5 (283-373)||(12915126-12915216)
chr5 (291-352)||(2984833-2984894)
chr5 (283-367)||(28569461-28569545)
chr5 (286-370)||(36579577-36579661)
chr5 (231-373)||(2680820-2680961)
chr5 (321-370)||(12457171-12457220)
chr5 (324-373)||(38972576-38972625)
chr5 (286-350)||(3565065-3565129)
chr5 (225-353)||(30996216-30996343)
chr5 (320-370)||(5909008-5909058)
chr5 (286-340)||(28045331-28045385)
chr5 (286-352)||(10126785-10126853)
chr5 (225-310)||(24207258-24207343)
chr5 (286-351)||(42987822-42987887)
chr5 (314-370)||(33862508-33862564)
chr5 (286-346)||(35311496-35311556)
[»] chr7 (40 HSPs)
chr7 (249-373)||(30839478-30839602)
chr7 (230-373)||(42908373-42908516)
chr7 (291-353)||(5376775-5376837)
chr7 (291-373)||(43217949-43218031)
chr7 (224-349)||(7779629-7779754)
chr7 (286-370)||(45886090-45886174)
chr7 (230-353)||(5567483-5567606)
chr7 (286-373)||(46127485-46127572)
chr7 (230-371)||(27062608-27062749)
chr7 (320-373)||(31425698-31425751)
chr7 (286-370)||(18125553-18125637)
chr7 (286-370)||(30650314-30650398)
chr7 (286-370)||(37196313-37196397)
chr7 (286-370)||(38152584-38152668)
chr7 (291-371)||(44845513-44845593)
chr7 (286-353)||(17884916-17884983)
chr7 (230-273)||(26068843-26068886)
chr7 (230-273)||(26093288-26093331)
chr7 (230-335)||(10996207-10996312)
chr7 (286-370)||(17851549-17851633)
chr7 (230-370)||(21702307-21702447)
chr7 (286-370)||(25980249-25980333)
chr7 (244-371)||(29156491-29156619)
chr7 (231-351)||(33840703-33840823)
chr7 (286-370)||(38140115-38140199)
chr7 (286-370)||(43507117-43507200)
chr7 (291-370)||(16865858-16865937)
chr7 (286-353)||(18826212-18826279)
chr7 (291-350)||(45379818-45379877)
chr7 (291-370)||(45709177-45709256)
chr7 (323-369)||(26072572-26072618)
chr7 (323-369)||(26096359-26096405)
chr7 (323-373)||(37103475-37103525)
chr7 (320-353)||(17885164-17885197)
chr7 (243-340)||(27062767-27062864)
chr7 (320-373)||(29015304-29015357)
chr7 (291-352)||(44794369-44794430)
chr7 (286-370)||(10072172-10072256)
chr7 (286-370)||(35074152-35074236)
chr7 (286-370)||(41103327-41103411)
[»] chr3 (24 HSPs)
chr3 (230-373)||(23329790-23329927)
chr3 (320-373)||(40796482-40796535)
chr3 (230-373)||(44107121-44107264)
chr3 (291-373)||(2487455-2487537)
chr3 (286-370)||(29284014-29284098)
chr3 (286-370)||(34025638-34025722)
chr3 (230-349)||(39728305-39728424)
chr3 (320-370)||(22536169-22536219)
chr3 (286-352)||(23580506-23580572)
chr3 (224-370)||(48391135-48391281)
chr3 (293-370)||(49579750-49579827)
chr3 (286-370)||(17146475-17146559)
chr3 (286-370)||(41937374-41937458)
chr3 (286-370)||(44179006-44179090)
chr3 (286-370)||(44252420-44252504)
chr3 (286-353)||(7470120-7470187)
chr3 (286-353)||(42758079-42758146)
chr3 (320-370)||(44953760-44953810)
chr3 (291-372)||(1772739-1772820)
chr3 (321-370)||(34154130-34154179)
chr3 (286-351)||(49025361-49025426)
chr3 (320-353)||(52572327-52572360)
chr3 (286-370)||(23154332-23154416)
chr3 (286-370)||(31127120-31127204)
[»] chr8 (20 HSPs)
chr8 (226-373)||(15174195-15174342)
chr8 (258-373)||(15068930-15069045)
chr8 (222-370)||(34301479-34301627)
chr8 (314-373)||(2183967-2184026)
chr8 (286-368)||(17220396-17220478)
chr8 (286-370)||(1063188-1063272)
chr8 (286-370)||(11255330-11255414)
chr8 (286-370)||(24870348-24870432)
chr8 (291-370)||(28977439-28977518)
chr8 (283-353)||(6388907-6388977)
chr8 (286-355)||(5858797-5858866)
chr8 (257-353)||(4594508-4594604)
chr8 (286-366)||(14186023-14186103)
chr8 (286-370)||(24927628-24927712)
chr8 (286-366)||(34776141-34776221)
chr8 (286-353)||(2076178-2076245)
chr8 (230-349)||(2190228-2190347)
chr8 (223-370)||(39445887-39446034)
chr8 (324-373)||(8030833-8030882)
chr8 (314-370)||(36132240-36132296)
[»] chr2 (25 HSPs)
chr2 (230-352)||(10920286-10920408)
chr2 (291-371)||(18485323-18485403)
chr2 (230-373)||(3546764-3546907)
chr2 (230-371)||(4427527-4427669)
chr2 (227-373)||(38342867-38343013)
chr2 (291-373)||(44057538-44057620)
chr2 (286-370)||(10208755-10208839)
chr2 (302-370)||(45256519-45256587)
chr2 (291-370)||(9632082-9632161)
chr2 (286-352)||(18106422-18106488)
chr2 (223-353)||(36128450-36128580)
chr2 (320-373)||(26755447-26755500)
chr2 (286-370)||(13830415-13830499)
chr2 (230-346)||(43371195-43371311)
chr2 (230-353)||(15546317-15546440)
chr2 (291-370)||(37473055-37473134)
chr2 (286-336)||(19105199-19105249)
chr2 (320-370)||(24414457-24414507)
chr2 (320-370)||(30846658-30846708)
chr2 (286-351)||(13705706-13705771)
chr2 (244-353)||(22900424-22900533)
chr2 (286-351)||(42798333-42798398)
chr2 (322-370)||(7314975-7315023)
chr2 (286-370)||(8916261-8916345)
chr2 (320-352)||(37999198-37999230)
[»] scaffold0005 (1 HSPs)
scaffold0005 (244-353)||(210996-211105)
[»] scaffold1630 (1 HSPs)
scaffold1630 (230-346)||(1246-1362)
[»] chr1 (28 HSPs)
chr1 (245-353)||(19892589-19892697)
chr1 (291-373)||(10450405-10450487)
chr1 (286-370)||(24710537-24710621)
chr1 (283-373)||(48024590-48024680)
chr1 (276-373)||(16237648-16237745)
chr1 (230-370)||(36187547-36187687)
chr1 (286-353)||(23493667-23493734)
chr1 (230-370)||(17092285-17092425)
chr1 (286-370)||(20774311-20774395)
chr1 (293-353)||(44615818-44615878)
chr1 (286-353)||(3628317-3628384)
chr1 (258-349)||(35077550-35077641)
chr1 (286-353)||(42439977-42440044)
chr1 (286-353)||(50426996-50427063)
chr1 (286-353)||(51421574-51421641)
chr1 (286-382)||(44792684-44792781)
chr1 (286-370)||(13390134-13390218)
chr1 (286-370)||(29936096-29936180)
chr1 (291-370)||(32594580-32594659)
chr1 (302-353)||(49742263-49742314)
chr1 (291-341)||(13020371-13020421)
chr1 (286-348)||(18354418-18354480)
chr1 (291-353)||(19572837-19572899)
chr1 (282-370)||(7997311-7997399)
chr1 (322-370)||(14902802-14902850)
chr1 (286-366)||(17134626-17134706)
chr1 (314-370)||(34060345-34060401)
chr1 (286-350)||(34673604-34673668)
[»] scaffold0015 (1 HSPs)
scaffold0015 (250-373)||(56241-56364)
[»] chr6 (19 HSPs)
chr6 (230-353)||(10188416-10188539)
chr6 (225-370)||(30815870-30816014)
chr6 (320-372)||(29200225-29200277)
chr6 (223-370)||(10142842-10142989)
chr6 (259-373)||(18908523-18908637)
chr6 (230-370)||(2366949-2367089)
chr6 (230-370)||(5863697-5863837)
chr6 (244-372)||(9457940-9458068)
chr6 (286-352)||(32052735-32052801)
chr6 (286-370)||(3484248-3484332)
chr6 (286-370)||(9442328-9442412)
chr6 (244-348)||(9458335-9458439)
chr6 (286-353)||(14505778-14505845)
chr6 (320-370)||(27534408-27534458)
chr6 (312-353)||(253163-253203)
chr6 (294-370)||(256878-256954)
chr6 (318-370)||(7978721-7978773)
chr6 (286-370)||(14254639-14254723)
chr6 (322-370)||(32959585-32959633)
[»] scaffold0519 (1 HSPs)
scaffold0519 (286-370)||(9981-10065)
[»] scaffold0008 (2 HSPs)
scaffold0008 (291-369)||(67410-67488)
scaffold0008 (291-369)||(75253-75331)
[»] scaffold0198 (1 HSPs)
scaffold0198 (292-349)||(21088-21145)
[»] scaffold0189 (1 HSPs)
scaffold0189 (320-369)||(3971-4020)
[»] scaffold0095 (1 HSPs)
scaffold0095 (223-370)||(32849-32996)
[»] scaffold0294 (1 HSPs)
scaffold0294 (286-339)||(14456-14509)
[»] scaffold0135 (1 HSPs)
scaffold0135 (291-384)||(35838-35931)
[»] scaffold0013 (1 HSPs)
scaffold0013 (325-382)||(128426-128483)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 41915667 - 41915300
Alignment:
Q  20 aaatgcttattcgaatttcatagatttggcaagcagctaacaaataagacacccgtcccaaaactataaaaataaaggacatcttattcaatccaattaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  41915667 aaatgcttattcgaatttcatagatttggcaagcagctaacaaataagacacccgtcccaaaactatatagataaaggacatcttattcaatccaattaa 41915568  T
Q  120 ggaacaatataattatacataaaagattattataagattcccatatctagtactagtactacaataataatttaaatatc---acaagtgttttatttaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  41915567 ggaacaatataattatacataaaagattattataagattcccatatctagtactagtactacaataataatttaaatatcacaacaagtgttttatttaa 41915468  T
Q  217 tccagcaagtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatata 316  Q
    ||| |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||  |||    
T  41915467 tcccgcaagtagacatggcaattggacggggtggggatgagttttgtcttctccatcgtcatcccctactctcgtatacttacctgttaccctattcata 41915368  T
Q  317 tttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattccgacttcatctc 384  Q
    || |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  41915367 ttcaacggggatgagaaattgaatcgcatccccgtccccaatagattcgggtattctgacttcatctc 41915300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 373
Target Start/End: Original strand, 11172574 - 11172717
Alignment:
Q  229 acatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggat 328  Q
    |||||||||| ||| |||||||||| | |||| | ||||||||||  |||| ||||||  | ||||||||| ||||||||||   ||||  |||||||||    
T  11172574 acatggcaatggggcggggtggggacgggtttcgccttccccatccccatc-cttacttccatatacttacttgttaccctacccatatccaacggggat 11172672  T
Q  329 gagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||    
T  11172673 gagaaattgaatcccatccccgtccccaatgggttcgggtattcc 11172717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 368
Target Start/End: Original strand, 45064895 - 45065023
Alignment:
Q  240 gggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaa 339  Q
    ||||| |||||||| |||||||||||||||||||  ||||   ||||||| |||||||||| |||| |||||  ||||  ||||||||||||||||||||    
T  45064895 gggtgaggtggggacgagttttgtcttccccatctccatccactactctcatatacttacccgttatcctatccatatccaacggggatgagaaattgaa 45064994  T
Q  340 tcgcatccccgtcctcaataggttcgggt 368  Q
    || |||||| |||| |||| |||||||||    
T  45064995 tctcatccctgtccccaatgggttcgggt 45065023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 230 - 373
Target Start/End: Original strand, 568023 - 568166
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | ||||||||||||||||   |||| | ||||  | |||||||||| |||||||||   |||||||| | |||||    
T  568023 catggcaatggggcggggtggggacgggttttgtcttccccatttccatcccctacttccatatacttacccgttaccctacccatatttaatgaggatg 568122  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||| ||||||||||| ||||  |||||||||||||    
T  568123 agaaattgaatcccatccccgtccccaatgagttcgggtattcc 568166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Complemental strand, 14606382 - 14606273
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgc 343  Q
    |||||| ||||| |||||| ||||| | || ||||| | ||||| ||||||||||||||||||||||  ||||   |||||||||||||||||||||| |    
T  14606382 ggggtgtggatgggttttgccttccacgtcctcatcccctactcccgtatacttacctgttaccctacctatacccaacggggatgagaaattgaatctc 14606283  T
Q  344 atccccgtcc 353  Q
    ||||||||||    
T  14606282 atccccgtcc 14606273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 373
Target Start/End: Complemental strand, 30266805 - 30266676
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgc 343  Q
    |||||||||| | |||||||||||||||||  |||||  ||||| | |||||||||| |||||||||   ||||  ||| |||||||||||||||||| |    
T  30266805 ggggtggggacgggttttgtcttccccatcaccatcttctactcccatatacttacccgttaccctactcatatccaacagggatgagaaattgaatccc 30266706  T
Q  344 atccccgtcctcaataggttcgggtattcc 373  Q
    ||  |||||| |||| ||||||||||||||    
T  30266705 ataaccgtccccaatgggttcgggtattcc 30266676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 373
Target Start/End: Original strand, 30285383 - 30285512
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgc 343  Q
    |||||||||| | |||||||||||||||||  |||||  ||||| | |||||||||| |||||||||   ||||  ||| |||||||||||||||||| |    
T  30285383 ggggtggggacgggttttgtcttccccatcaccatcttctactcccatatacttacccgttaccctactcatatccaacagggatgagaaattgaatccc 30285482  T
Q  344 atccccgtcctcaataggttcgggtattcc 373  Q
    ||  |||||| |||| ||||||||||||||    
T  30285483 ataaccgtccccaatgggttcgggtattcc 30285512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 31416310 - 31416249
Alignment:
Q  321 acggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattccgacttcatc 382  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  31416310 acggggatgagaaattgaatctcatccccgttcccaataggttcgggtattccgacttcatc 31416249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 370
Target Start/End: Original strand, 37107036 - 37107181
Alignment:
Q  225 gtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacgg 324  Q
    |||| ||||||||| ||||| | |||| |||||||||   ||||||||| ||||  || | |||  | ||||||||||||||||||   |||||||||||    
T  37107036 gtaggcatggcaatagggtgagatgggtatgagttttacattccccatcctcatacctgattcttatgtacttacctgttaccctactcatatttaacgg 37107135  T
Q  325 ggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    | ||||||||||||| | ||||||||||||| |  |||||||||||    
T  37107136 gaatgagaaattgaacctcatccccgtcctcgacgggttcgggtat 37107181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 48459171 - 48459255
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||| | |||||||||||||||||||||| ||||||||||| |||| |||||||||||    
T  48459171 tctcatatacttacccgttaccctactcatactcaacggggatgagaaattgaatctcatccccgtccccaatgggttcgggtat 48459255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 370
Target Start/End: Original strand, 7608593 - 7608739
Alignment:
Q  224 agtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacg 323  Q
    ||||| ||||||||| ||| |||||||||| | |||||  ||||||| ||  |||  |  | |||| ||||||||||||||||||||   ||||  ||||    
T  7608593 agtaggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatatccaacg 7608692  T
Q  324 gggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||| ||||||||||| | |  |||||||||||    
T  7608693 gggatgagaaattgaatcccatccccgtccccgaggggttcgggtat 7608739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 6382684 - 6382600
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| ||||||||||| |||  |||||||||||    
T  6382684 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccaacgggttcgggtat 6382600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 382
Target Start/End: Complemental strand, 10574915 - 10574763
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| ||| |||| | |||||||||||||||||||  ||||   ||||| | |||||||||| ||||||| |   |||   |||||| |||    
T  10574915 catggcaatggggcgggatgggaacgagttttgtcttccccatccccatcctctactcccatatacttacccgttaccccacccatacccaacgggaatg 10574816  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattccgacttcatc 382  Q
    |||||||||||| |||| |||||| |||| | |||||||||||| || |||||    
T  10574815 agaaattgaatcacatctccgtccccaatggattcgggtattcccacctcatc 10574763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 15987639 - 15987555
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||   ||||  |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  15987639 tctcatatacttacctgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 15987555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 373
Target Start/End: Original strand, 21544180 - 21544328
Alignment:
Q  225 gtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacgg 324  Q
    |||| ||||||||| |||  ||||||||| | |||||| ||||||||||  |||| | ||||  | |||||||| |||||||| ||   |||   |||||    
T  21544180 gtaggcatggcaatggggcagggtggggacgggttttgccttccccatctccatcccctacttccatatacttagctgttaccttacccatacccaacgg 21544279  T
Q  325 ggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||||||||  ||| |||||| ||||| |||||||||||||    
T  21544280 ggatgagaaattgaatctaatctccgtccccaataagttcgggtattcc 21544328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 31918970 - 31918886
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| ||||||||||  |||   |||||||||||||||||||||| ||||||||||| | || |||||||||||    
T  31918970 tctcatatacttacccgttaccctatccatacccaacggggatgagaaattgaatcccatccccgtccccgatgggttcgggtat 31918886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 352
Target Start/End: Complemental strand, 32596651 - 32596524
Alignment:
Q  224 agtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacg 323  Q
    ||||||||||||||  |||||||||| |||||||||||  |||| || ||  ||| ||| | |||| ||||||||| ||||||||||   ||||| ||||    
T  32596651 agtagacatggcaag-gggtggggtgaggatgagttttaccttctccgtccccatatctaattctcatatacttacttgttaccctacccatattcaacg 32596553  T
Q  324 gggatgagaaattgaatcgcatccccgtc 352  Q
    ||||| |||||||||||  ||||||||||    
T  32596552 gggataagaaattgaatttcatccccgtc 32596524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 5903080 - 5902957
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||||||| |||||||||| | |||||  ||||||||||  |||  |  | |||| |||||||||| |||||||||   ||||  |||| |||||    
T  5903080 catggcaattgggcggggtggggacgggttttaccttccccatccccatacccgattctcatatacttacccgttaccctacccatatccaacgaggatg 5902981  T
Q  330 agaaattgaatcgcatccccgtcc 353  Q
    |||||||||||| |||||||||||    
T  5902980 agaaattgaatcccatccccgtcc 5902957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 44887591 - 44887658
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||||||||||||||  ||||  || ||||||||||||||||||| |||||||||||    
T  44887591 tctcatatacttacctgttaccctatccatatccaatggggatgagaaattgaatctcatccccgtcc 44887658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 36918694 - 36918804
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    |||||||||  || ||||||||||||||||||  ||||||| ||  |||  | ||||||| ||||||||||||||||||| |  ||||  | ||||||||    
T  36918694 catggcaatcaggcggggtggggatgagttttaccttccccgtccccataccctactctcatatacttacctgttaccctgtccatatccagcggggatg 36918793  T
Q  330 agaaattgaat 340  Q
    |||||||||||    
T  36918794 agaaattgaat 36918804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 30672668 - 30672721
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||    
T  30672668 aacggggatgagaaattgaatctcatccccgtccccaatgggttcaggtattcc 30672721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 4766725 - 4766641
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||||||||||||||  |||   ||||| |||||||||||||||| ||||||||||||  |  |||||||||||    
T  4766725 tctcatatacttacctgttaccctatccatacccaacggagatgagaaattgaatctcatccccgtccttgacgggttcgggtat 4766641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 11027701 - 11027841
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | |||||  ||||||| || ||||  || | |||| |||||||||  |||||||||   |||    |||||||||    
T  11027701 catggcaatggggcggggtggggacgggttttaccttccccgtcctcatacctgattctcatatacttactcgttaccctacccataccctacggggatg 11027800  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||| ||||||||||| | | ||||||||||||    
T  11027801 agaaattgaatctcatccccgtccccgacaggttcgggtat 11027841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 26564516 - 26564600
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||   ||||  |||| ||||||||||||||||| |||| |||||| |||  |||||||||||    
T  26564516 tctcatatacttacctgttaccctacccatatccaacgaggatgagaaattgaatctcatctccgtccccaacgggttcgggtat 26564600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 44317229 - 44317313
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||   ||| | |||||||||||||||||||||| ||||||| ||| | |  |||||||||||    
T  44317229 tctcatatacttacctgttaccctacccatactcaacggggatgagaaattgaatcccatccccatccccgacgggttcgggtat 44317313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 370
Target Start/End: Complemental strand, 55827095 - 55826949
Alignment:
Q  224 agtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacg 323  Q
    ||||| ||||||||| ||| |||||||||| | |||||  ||||||| ||  |||  |  | |||| |||||||| |||||||||||   ||||  || |    
T  55827095 agtaggcatggcaatggggcggggtggggacgggttttaccttccccgtccccataccggattctcatatacttatctgttaccctacccatatccaatg 55826996  T
Q  324 gggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||| ||||||||||| | |  |||||||||||    
T  55826995 gggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 55826949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 29527476 - 29527537
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtc 352  Q
    ||||||||| ||||||||||  |||| || | ||||||||||||||||||| ||||||||||    
T  29527476 tatacttacatgttaccctacttatacttgatggggatgagaaattgaatctcatccccgtc 29527537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 11123277 - 11123193
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||   ||||  ||||| ||||| |||||||||| ||||||||||| | |  |||||||||||    
T  11123277 tctcatatacttacctgttaccctacccatatccaacggagatgataaattgaatcacatccccgtccccgacgggttcgggtat 11123193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 31782284 - 31782364
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtatt 371  Q
    |||||||||  ||||||||| ||||||   ||  |||||||||||||||||  |||||||||| |||| ||||||||||||    
T  31782284 tatacttactcgttaccctacatatatccgacaaggatgagaaattgaatcctatccccgtccccaatgggttcgggtatt 31782364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 39046647 - 39046726
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||  |||| ||||  |||||  ||||||||||||||||||||||| |||||||||| | |  |||||||||||    
T  39046647 tatacttactcgttatcctacctatatccaacggggatgagaaattgaatcgtatccccgtccccgacgggttcgggtat 39046726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 349
Target Start/End: Original strand, 47103345 - 47103464
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||| ||||| |||||||| ||||||||||   ||| | ||||| | |||| ||| | |||||||||   ||||  |||| |||||    
T  47103345 catggcaatggggcggggaggggacgagttttgccttccccatcccaatcccctactcccatatatttatccgttaccctacccatatccaacgaggatg 47103444  T
Q  330 agaaattgaatcgcatcccc 349  Q
    |||||||||||| |||||||    
T  47103445 agaaattgaatcccatcccc 47103464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 47239779 - 47239728
Alignment:
Q  302 gttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    ||||||||||  ||||  |||||||||||||||||||||| |||||||||||    
T  47239779 gttaccctatccatatcaaacggggatgagaaattgaatctcatccccgtcc 47239728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 47550763 - 47550708
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatc 341  Q
    ||||||||||||||| ||||||||||  |||   ||||||||||||||||||||||    
T  47550763 tctcgtatacttacccgttaccctatccatacccaacggggatgagaaattgaatc 47550708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 18423286 - 18423340
Alignment:
Q  319 taacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||||||||||| || ||||| ||||| ||||| ||| |||||||||    
T  18423286 taacggggatgagaaattgattctcatcctcgtccccaatatgtttgggtattcc 18423340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 9229972 - 9230065
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattccgacttcatctc 384  Q
    ||||||| || |||||||||   ||||  |||||||||||||||||||| | ||||||||| | | |  ||||||||||||||  |||||||||    
T  9229972 tatacttgcccgttaccctactcatatccaacggggatgagaaattgaaccacatccccgttcccgacgggttcgggtattcccgcttcatctc 9230065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 350
Target Start/End: Complemental strand, 16217139 - 16217014
Alignment:
Q  225 gtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacgg 324  Q
    |||| ||||||||| ||| |||||| ||| | |||||  ||||||| ||  ||| ||  | |||| |||||||||| |||||||||   |||   |||||    
T  16217139 gtaggcatggcaatggggcggggtgcggaagggttttaccttccccgtccccatatccgattctcatatacttacccgttaccctacccatacccaacgg 16217040  T
Q  325 ggatgagaaattgaatcgcatccccg 350  Q
    ||||||||||||||||| ||||||||    
T  16217039 ggatgagaaattgaatcccatccccg 16217014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 43892230 - 43892263
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||||||||||||||||| |||||||||||    
T  43892230 aacggggatgagaaattgaatctcatccccgtcc 43892263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 13015782 - 13015726
Alignment:
Q  314 atatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||| ||||||||||||||||  ||||||||||| |||  |||||||||||    
T  13015782 atatctaacgaggatgagaaattgaatttcatccccgtccccaacgggttcgggtat 13015726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 23045479 - 23045336
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||| ||| ||| |||||||||| | |||||||||||||||||  |||| | ||||| | |||||||||| |||||||||   ||||  ||||||||||    
T  23045479 catggtaatggggcggggtggggacgggttttgtcttccccatccccatcccctactcccatatacttacccgttaccctacccatatccaacggggatg 23045380  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||    
T  23045379 agaaattgaatcccatccccgtccccaatgggttcgggtattcc 23045336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 373
Target Start/End: Complemental strand, 12712990 - 12712849
Alignment:
Q  231 atggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatga 330  Q
    |||||||| ||| |||||||||| | ||||||||||||||||| | ||| | ||||| | |||||||||| |||||||||   ||||   |||||||| |    
T  12712990 atggcaatggggcggggtggggacgggttttgtcttccccatcct-atcccctactcccatatacttacccgttaccctacccatatccgacggggataa 12712892  T
Q  331 gaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||||| ||||| ||||| |||| ||||||||||||||    
T  12712891 gaaattgaatctcatcctcgtccccaatgggttcgggtattcc 12712849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 373
Target Start/End: Complemental strand, 12774254 - 12774113
Alignment:
Q  231 atggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatga 330  Q
    |||||||| ||| |||||||||| | ||||||||||||||||| | ||| ||||||| | |||||||||| |||||||||   |||    |||||||| |    
T  12774254 atggcaatggggcggggtggggacgggttttgtcttccccatcct-atcccttactcccatatacttacccgttaccctacccatacccgacggggataa 12774156  T
Q  331 gaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||||| ||||| ||||| |||| ||||||||||||||    
T  12774155 gaaattgaatctcatcctcgtccccaatgggttcgggtattcc 12774113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 370
Target Start/End: Original strand, 15889828 - 15889974
Alignment:
Q  224 agtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacg 323  Q
    ||||| ||||||||| ||| |||||||||| | |||||  ||||||||||  |||  |  | |||| ||||||||||||||||||||   |||  |||||    
T  15889828 agtaggcatggcaatggggcggggtggggacgggttttaccttccccatccccataaccgattctcatatacttacctgttaccctacccatacctaacg 15889927  T
Q  324 gggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||| ||||||||||| | |  |||||||||||    
T  15889928 gggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 15889974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 373
Target Start/End: Original strand, 34258905 - 34258995
Alignment:
Q  283 tactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||| ||||||||| ||||||||||   ||||| |||| |||||||||||| |||| ||||||||||| |||| ||||||||||||||    
T  34258905 tactctcatatacttacttgttaccctacccatattcaacgaggatgagaaattaaatcacatccccgtccccaatgggttcgggtattcc 34258995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 20973958 - 20973830
Alignment:
Q  223 aagtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaac 322  Q
    |||||| ||||||||||||| |||||||||| | |||||  ||||||| ||  |||  || | |||  ||||||||||||||||||||   ||||  |||    
T  20973958 aagtaggcatggcaattgggaggggtggggacgggttttaccttccccgtccccataactgattcttatatacttacctgttaccctacccatatccaac 20973859  T
Q  323 ggggatgagaaattgaatcgcatccccgt 351  Q
    ||||||||||||||||||| |||||||||    
T  20973858 ggggatgagaaattgaatctcatccccgt 20973830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 10833796 - 10833938
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    |||| |||| ||||||| | |||| |||||||||||| |||||| ||||  |  |||| | ||||||||||||||||||||   ||| | |||| | |||    
T  10833796 catgacaatggggtgggattgggacgagttttgtctttcccatcctcattcccaactcccatatacttacctgttaccctacccatactcaacgagaatg 10833895  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattc 372  Q
    ||||||| |||| ||||||||||  |||| |||||||||||||    
T  10833896 agaaattaaatctcatccccgtctccaatgggttcgggtattc 10833938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 373
Target Start/End: Original strand, 12250567 - 12250715
Alignment:
Q  225 gtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacgg 324  Q
    |||| ||||||||| |||  ||||| ||| | |||||||||||||||||  ||||   ||||| | ||||||||  |||| |||||   ||||  | |||    
T  12250567 gtaggcatggcaatggggcagggtgcggacgggttttgtcttccccatccccatcctctactcccatatacttatttgttgccctacccatatccaccgg 12250666  T
Q  325 ggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||||||||||| ||||||||||| |||| ||||| ||||||||    
T  12250667 ggatgagaaattgaatcccatccccgtccccaatgggttcaggtattcc 12250715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 6093571 - 6093448
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| ||| |||||| | ||||| ||||||||||| ||||  |  | |||| ||||||||| ||||||||||   ||||  ||||||||||    
T  6093571 catggcaatggggcgggatggggacgggttttatcttccccatcttcatacccgattctcatatacttacttgttaccctacccatatccaacggggatg 6093472  T
Q  330 agaaattgaatcgcatccccgtcc 353  Q
    ||||||||||||  ||||||||||    
T  6093471 agaaattgaatcctatccccgtcc 6093448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 13402408 - 13402329
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||| |||||||||  ||||   |||||||||||||||||||||| ||||||||||| | || |||||||||||    
T  13402408 tatacttacccgttaccctacctatacccaacggggatgagaaattgaatctcatccccgtccccgatgggttcgggtat 13402329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 40517430 - 40517553
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||||| |||||  ||||||| ||  |||  |  | |||| ||||||||||||||||||||   |||   ||||||||||    
T  40517430 catggcaatggggcggggtggggatgggttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatacccaacggggatg 40517529  T
Q  330 agaaattgaatcgcatccccgtcc 353  Q
    |||||||||||| |||||||||||    
T  40517530 agaaattgaatctcatccccgtcc 40517553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 373
Target Start/End: Original strand, 12915126 - 12915216
Alignment:
Q  283 tactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||| |||||||||| ||||||||||  ||||  |||||||||| |||||||||||| ||| || | | |||| ||||||||||||||    
T  12915126 tactctcatatacttacccgttaccctatccatatccaacggggatgcgaaattgaatcgtatctccattcccaatgggttcgggtattcc 12915216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 2984833 - 2984894
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtc 352  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||| ||||| ||||    
T  2984833 tatacttacctgttaccctactcatattcaacggggatgagaaattgaatcccatcctcgtc 2984894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 367
Target Start/End: Complemental strand, 28569545 - 28569461
Alignment:
Q  283 tactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcggg 367  Q
    ||||| ||||||||||| ||||||||||   |||   ||||| |||||||||||||||| ||||||||||| |||| ||||||||    
T  28569545 tactcccgtatacttacatgttaccctactcatacccaacggagatgagaaattgaatcccatccccgtccccaatgggttcggg 28569461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 36579661 - 36579577
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||| ||||||||||   |||   |||||||||||||||||||||| |||| ||||||| || ||||||||||||    
T  36579661 tctcatatacttacatgttaccctacccatacccaacggggatgagaaattgaatctcatctccgtcctaaacaggttcgggtat 36579577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 373
Target Start/End: Original strand, 2680820 - 2680961
Alignment:
Q  231 atggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatga 330  Q
    ||||||||  || |||||||||| | |||||| ||||||||||  |||||| || || | ||||| |||| |||||||||   ||||  ||||| |||||    
T  2680820 atggcaatgcggcggggtggggacgggttttgccttccccatccccatctcctattcccatatacctacccgttaccctacccatatccaacggagatga 2680919  T
Q  331 gaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
     |||||||||| ||||| | ||| |||| ||||||||||||||    
T  2680920 -aaattgaatcacatcctcatccccaatgggttcgggtattcc 2680961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 12457171 - 12457220
Alignment:
Q  321 acggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  12457171 acgggtatgagaaatcgaatcgcatccccgtcctcaatgggttcaggtat 12457220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 38972576 - 38972625
Alignment:
Q  324 gggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||| ||||| ||||||||||||| || ||||||||||||||    
T  38972576 gggatgagaaatcgaatcacatccccgtcctcgatgggttcgggtattcc 38972625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 3565129 - 3565065
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccg 350  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| ||||||||    
T  3565129 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatctcatccccg 3565065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 353
Target Start/End: Original strand, 30996216 - 30996343
Alignment:
Q  225 gtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacgg 324  Q
    |||| ||||||||| ||| |||||||||| | |||||  |||| || || ||||  |  | |||| |||| |||||||||||| ||  |||||| |||||    
T  30996216 gtaggcatggcaatggggcggggtggggacgggttttaccttctccgtcctcatacccgattctcatatatttacctgttaccttacctatattcaacgg 30996315  T
Q  325 ggatgagaaattgaatcgcatccccgtcc 353  Q
    | ||||||||||||||| |||||||||||    
T  30996316 g-atgagaaattgaatctcatccccgtcc 30996343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 5909058 - 5909008
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  5909058 aacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 5909008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 340
Target Start/End: Original strand, 28045331 - 28045385
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaat 340  Q
    |||| ||||||||||||||||||||   ||| | |||||||||||||||||||||    
T  28045331 tctcatatacttacctgttaccctacccatactcaacggggatgagaaattgaat 28045385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 10126785 - 10126853
Alignment:
Q  286 tctcgtatacttacctgttacccta--tatatatttaacggggatgagaaattgaatcgcatccccgtc 352  Q
    |||| |||||||||| ||||| |||  |||||||  ||| |||||||||||||||||| ||||||||||    
T  10126785 tctcatatacttacccgttactctacctatatatccaacagggatgagaaattgaatctcatccccgtc 10126853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 24207258 - 24207343
Alignment:
Q  225 gtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttacccta 310  Q
    |||| ||||||||| ||| |||||||||||| |||||  ||||| ||||  ||| || ||||||| |||||||||  |||||||||    
T  24207258 gtaggcatggcaatggggcggggtggggatgggttttaccttcctcatccccatatcctactctcatatacttactcgttacccta 24207343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 42987887 - 42987822
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgt 351  Q
    ||||||||||||||| ||||| |||   ||||  |||||| ||||||||||||||| |||||||||    
T  42987887 tctcgtatacttacccgttacgctactcatatccaacgggaatgagaaattgaatctcatccccgt 42987822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 33862564 - 33862508
Alignment:
Q  314 atatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||| |||||||||||||||||||| | ||||||||||| | |  |||||||||||    
T  33862564 atattcaacggggatgagaaattgaacctcatccccgtccccgacgggttcgggtat 33862508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 35311496 - 35311556
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatc 346  Q
    |||| |||||||||| |||| |||| ||||||  ||||||||||| |||||||||| ||||    
T  35311496 tctcatatacttacccgttatcctacatatatccaacggggatgaaaaattgaatcccatc 35311556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 373
Target Start/End: Complemental strand, 30839602 - 30839478
Alignment:
Q  249 ggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccc 348  Q
    ||||| |||||||||||||| ||||  |||| | ||||| | ||||||||| ||||||||||   ||| | |||||||||||||||||||||| ||||||    
T  30839602 ggggacgagttttgtcttcctcatccccatcccctactcccatatacttacttgttaccctaacaatactcaacggggatgagaaattgaatctcatccc 30839503  T
Q  349 cgtcctcaataggttcgggtattcc 373  Q
    ||||| |||| ||||||||||||||    
T  30839502 cgtccccaatgggttcgggtattcc 30839478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 42908516 - 42908373
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    |||| |||| ||| |||||||||| | |||||| ||||||||||  |||| | ||||  | |||||||||| |||||||||   |||   || |||||||    
T  42908516 catgacaatggggcggggtggggacgggttttgccttccccatccccatcccctacttccatatacttacccgttaccctacccatacccaaaggggatg 42908417  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||| |||||||||||  ||| ||||||||||||||    
T  42908416 agaaattgaatcccatccccgtcccgaatgggttcgggtattcc 42908373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 5376775 - 5376837
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||||| ||||||||||  ||||| |||||||||||||||||||| |||||||||||||    
T  5376775 tatacttacccgttaccctattcatattcaacggggatgagaaattgaaccgcatccccgtcc 5376837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 43217949 - 43218031
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||| ||||||||||   |||| |||||| |||||||||||||||| |||| |||||| |||| ||||||||||||||    
T  43217949 tatacttacttgttaccctacccatatctaacggagatgagaaattgaatctcatctccgtccccaatgggttcgggtattcc 43218031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 349
Target Start/End: Original strand, 7779629 - 7779754
Alignment:
Q  224 agtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacg 323  Q
    ||||| ||||||||| |||||||||||||| | |||||  ||||||| ||  |||  |  | ||||||||||||| |||||||||||   ||||  ||||    
T  7779629 agtaggcatggcaatggggtggggtggggacgggttttaccttccccgtccccatacccgattctcgtatacttatctgttaccctacccatatccaacg 7779728  T
Q  324 gggatgagaaattgaatcgcatcccc 349  Q
    |||||||||||||||||| |||||||    
T  7779729 gggatgagaaattgaatctcatcccc 7779754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 45886174 - 45886090
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||   ||||  |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  45886174 tctcatatacttacctgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 45886090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 5567606 - 5567483
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| ||||||||||||||||||  || |||| ||  |||  | || |||| ||||||||||||||||||||   ||||  ||||||||||    
T  5567606 catggcaatggggcggggtggggatgagttttacctcccccgtccccataccctattctcatatacttacctgttaccctactcatatccaacggggatg 5567507  T
Q  330 agaaattgaatcgcatccccgtcc 353  Q
    |||||| |||||  ||||||||||    
T  5567506 agaaatagaatcctatccccgtcc 5567483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 373
Target Start/End: Complemental strand, 46127572 - 46127485
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||| |||||||||||||||||||||  | ||| |||||||||||||||||||| | ||||||| ||| | || ||||| ||||||||    
T  46127572 tctcatatacttacctgttaccctatccacattcaacggggatgagaaattgaacctcatccccatccccgatgggttcaggtattcc 46127485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 371
Target Start/End: Complemental strand, 27062749 - 27062608
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    |||||| || ||| |||||||||| | |||||| ||||| ||||  | || | ||||||| |||||||||  |||| ||||   ||||  ||||||||||    
T  27062749 catggcgatggggcggggtggggacgggttttgccttcctcatccccgtcccctactctcatatacttactcgttatcctacccatatccaacggggatg 27062650  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtatt 371  Q
    | |||| ||||| ||||||||||| |||| ||||||||||||    
T  27062649 acaaatagaatctcatccccgtccccaatgggttcgggtatt 27062608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 31425698 - 31425751
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||    
T  31425698 aacggggatgagaaattgaatctcatccccatccccaataggttcaggtattcc 31425751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 18125637 - 18125553
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||  |||| |||||  |||| ||||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  18125637 tctcatatacttactcgttatcctatccatatctaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 18125553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 30650314 - 30650398
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  30650314 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 30650398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 37196397 - 37196313
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||||| |||||||||   |||   |||||||||||||||||||||| |||| |||||||| |  |||||||||||    
T  37196397 tctcgtatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatctccgtcctcgacgggttcgggtat 37196313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 38152584 - 38152668
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||| | |||||||||||||||||||||| ||||||||||| | || |||| ||||||    
T  38152584 tctcatatacttacccgttaccctacccatactcaacggggatgagaaattgaatcccatccccgtccccgatgggtttgggtat 38152668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 371
Target Start/End: Complemental strand, 44845593 - 44845513
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtatt 371  Q
    ||||||||| ||||||||||   ||||  ||||| |||||||||||||||||||||||| |||||||| | ||| ||||||    
T  44845593 tatacttacatgttaccctaaccatatccaacggagatgagaaattgaatcgcatccccatcctcaatggattcaggtatt 44845513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 17884916 - 17884983
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||| ||||| |||||||||   ||||| |||||||||||||||||||||| |||||||||||    
T  17884916 tctcatatatttacccgttaccctacccatattcaacggggatgagaaattgaatctcatccccgtcc 17884983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 26068843 - 26068886
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatc 273  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  26068843 catggcaatggggcggggtggggatgagttttgtcttccccatc 26068886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 26093288 - 26093331
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatc 273  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||    
T  26093288 catggcaatggggcggggtggggatgagttttgtcttccccatc 26093331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 10996312 - 10996207
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | |||||  ||||||||||  |||  | || |||| |||||||||||||||| |||   ||||| ||||||||||    
T  10996312 catggcaatggggcggggtggggacgggttttaccttccccatccccataccctattctcatatacttacctgttactctacccatattcaacggggatg 10996213  T
Q  330 agaaat 335  Q
    ||||||    
T  10996212 agaaat 10996207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 17851549 - 17851633
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| |||||| |||||| |  |||||||||||    
T  17851549 tctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccctgtcctcgacgggttcgggtat 17851633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 21702307 - 21702447
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | |||||  ||||||||||  |||  |  | |||| |||||||||| | |||||||   ||| | ||||||||||    
T  21702307 catggcaatggggaggggtggggacgggttttaccttccccatccccatacccgattctcatatacttacccgctaccctacccatactcaacggggatg 21702406  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||  |||||||||| | |  |||||||||||    
T  21702407 agaaattgaatcctatccccgtccccgacgggttcgggtat 21702447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 25980333 - 25980249
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   ||||||||| |||||||||||| |||| ||||||||||  |||||||||||    
T  25980333 tctcatatacttacccgttaccctacccatacccaacggggataagaaattgaatctcatctccgtcctcaacgggttcgggtat 25980249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 371
Target Start/End: Original strand, 29156491 - 29156619
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatac-ttacctgttaccctatatatatttaacggggatgagaaattgaatcg 342  Q
    |||||| ||| |||||||||||||| ||||  |||| |||| |||| ||||| |||||||||||||||   |||   |||| |||||| |||||||||      
T  29156491 ggggtgaggacgagttttgtcttcctcatccccatcccttagtctcatatactttacctgttaccctactcatacccaacgaggatgaaaaattgaattt 29156590  T
Q  343 catccccgtcctcaataggttcgggtatt 371  Q
    |||||| || | ||||||||||| |||||    
T  29156591 catccctgttcccaataggttcgcgtatt 29156619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 351
Target Start/End: Original strand, 33840703 - 33840823
Alignment:
Q  231 atggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatga 330  Q
    |||||||| ||| |||||||||| | |||||  |||| |||||  |||  | || |||| ||||||||||||||||||||   ||| | |||||||||||    
T  33840703 atggcaatggggcggggtggggacgggttttaccttctccatccccatgccatattctcatatacttacctgttaccctacccatactcaacggggatga 33840802  T
Q  331 gaaattgaatcgcatccccgt 351  Q
    ||||| ||| | |||||||||    
T  33840803 gaaatcgaacctcatccccgt 33840823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 38140199 - 38140115
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  38140199 tctcatatacttacccgttaccctacccataaccaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 38140115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 43507117 - 43507200
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||   ||| | |||||| |||| |||||||||| ||||||||||| | | ||||||||||||    
T  43507117 tctcatatacttacctgttaccctacccatactcaacggg-atgacaaattgaatctcatccccgtccccgacaggttcgggtat 43507200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 16865858 - 16865937
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  16865858 tatacttacccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 16865937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 18826279 - 18826212
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   |||  ||||||||||||||||||||| | |||||||||||    
T  18826279 tctcatatacttacccgttaccctacccatacctaacggggatgagaaattgaaccccatccccgtcc 18826212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 350
Target Start/End: Original strand, 45379818 - 45379877
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccg 350  Q
    |||| ||| |||||||||||   |||| ||||||||||||||||||||||| ||||||||    
T  45379818 tatatttatctgttaccctacccatatctaacggggatgagaaattgaatctcatccccg 45379877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 45709256 - 45709177
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||| |||||||||||  |||   ||| |||||||||||||||||| ||||||||||||| |  |||||||||||    
T  45709256 tatatttacatgttaccctatccatacccaactgggatgagaaattgaatcccatccccgtcctcgacgggttcgggtat 45709177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 26072572 - 26072618
Alignment:
Q  323 ggggatgagaaattgaatcgcatccccgtcctcaataggttcgggta 369  Q
    ||||||||||||||||||| ||||||||||  |||| ||||||||||    
T  26072572 ggggatgagaaattgaatctcatccccgtctccaatgggttcgggta 26072618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Original strand, 26096359 - 26096405
Alignment:
Q  323 ggggatgagaaattgaatcgcatccccgtcctcaataggttcgggta 369  Q
    ||||||||||||||||||| ||||||||||  |||| ||||||||||    
T  26096359 ggggatgagaaattgaatctcatccccgtctccaatgggttcgggta 26096405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 37103525 - 37103475
Alignment:
Q  323 ggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||||||||||||| |||| || ||| |||| ||||||||||||||    
T  37103525 ggggatgagaaattgaatctcatctccttccccaatgggttcgggtattcc 37103475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 17885164 - 17885197
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||||||||||||||||| |||||||||||    
T  17885164 aacggggatgagaaattgaatctcatccccgtcc 17885197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 27062767 - 27062864
Alignment:
Q  243 tggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaat 340  Q
    ||||| ||||| | |||||  |||||||||| ||||| | ||||||| ||||||||| || |||||||   |||   |||||||||||||||||||||    
T  27062767 tggggcggggacgggtttttccttccccatcctcatcccctactctcatatacttacttgctaccctacccatacccaacggggatgagaaattgaat 27062864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 373
Target Start/End: Complemental strand, 29015357 - 29015304
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||| |||||||||||||||| ||||||||||| |||| ||||  ||||||||    
T  29015357 aacggagatgagaaattgaatctcatccccgtccccaatgggtttaggtattcc 29015304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 44794430 - 44794369
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtc 352  Q
    |||| |||||||||||||||   |||| |||| |||||||||||| ||||| ||||||||||    
T  44794430 tatatttacctgttaccctacccatatctaacagggatgagaaatcgaatctcatccccgtc 44794369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 10072172 - 10072256
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||   |||   ||| |||||||||||||||||| ||||| ||||| | |  |||||||||||    
T  10072172 tctcatatacttacctgttaccctacccatacccaacagggatgagaaattgaatctcatcctcgtccccgacgggttcgggtat 10072256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 35074152 - 35074236
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||| ||||| ||||||||||| | |  |||||||||||    
T  35074152 tctcatatacttacccgttaccctacccatacccaacggggatgagaaatcgaatcccatccccgtccccgacgggttcgggtat 35074236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 41103327 - 41103411
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||| |||||| |||||||||  ||||   |||||||||||||||||||||| ||| ||||||| | || |||| ||||||    
T  41103327 tctcatatgcttacccgttaccctacctatacccaacggggatgagaaattgaatctcattcccgtccccgatgggtttgggtat 41103411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 373
Target Start/End: Original strand, 23329790 - 23329927
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    |||| |||| ||||||||| |||||||||||||||||||      ||||| | ||||||| |||||||||| |||| |||||  ||||  ||||||||||    
T  23329790 catgacaatggggtggggtagggatgagttttgtcttcc------tcatcccctactctcatatacttacccgttatcctatccatatccaacggggatg 23329883  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||| || |||| ||| |||| ||||||||||||||    
T  23329884 agaaattgaatctcacccccttccccaatgggttcgggtattcc 23329927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 373
Target Start/End: Complemental strand, 40796535 - 40796482
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  40796535 aacggggatgagaaattgaatctcatccccgtccccaataggttcgggtattcc 40796482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 373
Target Start/End: Complemental strand, 44107264 - 44107121
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| | | |||||||||| |||||||  ||||||| || ||||  |  | |||| |||||||||| |||||||||   |||   ||||||||||    
T  44107264 catggcaatggagcggggtggggacgagttttaccttccccgtcctcatacccgattctcatatacttacccgttaccctacccatacccaacggggatg 44107165  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||| ||||||||||| | |  ||||||||||||||    
T  44107164 agaaattgaatctcatccccgtccccgacgggttcgggtattcc 44107121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 2487455 - 2487537
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||||||||||| ||   ||||  |||||||||||||||||||||  ||||||| ||| |||| ||||||||||||||    
T  2487455 tatacttacctgttaccttacccatatccaacggggatgagaaattgaatttcatccccatccccaatgggttcgggtattcc 2487537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 29284014 - 29284098
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| ||||||||||  |||   |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  29284014 tctcatatacttacccgttaccctatccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 29284098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 34025638 - 34025722
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| ||||||||||  ||||  |||||||||||||||||||||| || |||||||| | |  |||||||||||    
T  34025638 tctcatatacttacccgttaccctattcatatccaacggggatgagaaattgaatctcagccccgtccccgacgggttcgggtat 34025722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 349
Target Start/End: Original strand, 39728305 - 39728424
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| |||||||  ||||||| ||  |||  |  | |||| ||||||||||||||||||||   |||   ||||||||||    
T  39728305 catggcaatggggcggggtggggacgagttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatacccaacggggatg 39728404  T
Q  330 agaaattgaatcgcatcccc 349  Q
    |||||||||||| |||||||    
T  39728405 agaaattgaatctcatcccc 39728424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 22536219 - 22536169
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||||| ||||||||||||| |  |||||||||||    
T  22536219 aacggggatgagaaattgaatctcatccccgtcctcgacgggttcgggtat 22536169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 23580506 - 23580572
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtc 352  Q
    |||| ||||||||||||||||  ||  |||||| |||||||||||||||||||||  ||||||||||    
T  23580506 tctcatatacttacctgttacattacctatattcaacggggatgagaaattgaatttcatccccgtc 23580572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 370
Target Start/End: Complemental strand, 48391281 - 48391135
Alignment:
Q  224 agtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacg 323  Q
    ||||| ||||||||| ||| |||||||||| | |||||  | ||||||||  ||| ||  | |||| ||||||||||||||||| ||   ||| | ||||    
T  48391281 agtaggcatggcaatggggcggggtggggacgggttttaccctccccatccccatgtccgattctcatatacttacctgttaccttacccatactcaacg 48391182  T
Q  324 gggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
     |||| |||||||||||| ||||||||||| | |  |||||||||||    
T  48391181 aggattagaaattgaatctcatccccgtccccgactggttcgggtat 48391135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 370
Target Start/End: Original strand, 49579750 - 49579827
Alignment:
Q  293 tacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||| |||||||||   |||| ||||||||||||||||||||||  ||||||||||| | |  |||||||||||    
T  49579750 tacttacccgttaccctactcatatctaacggggatgagaaattgaatttcatccccgtccccgaagggttcgggtat 49579827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 17146559 - 17146475
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||| | ||||| ||||| |||||||||| ||||||||||| | || |||||||||||    
T  17146559 tctcatatacttacccgttaccctacccatactcaacggagatgacaaattgaatctcatccccgtccccgatgggttcgggtat 17146475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 41937458 - 41937374
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||| |||||||||||||||   ||||  ||||| |||||||||||||| | ||||||||||||| |  |||||||||||    
T  41937458 tctcatatatttacctgttaccctactcatatccaacggagatgagaaattgaaccccatccccgtcctcgacgggttcgggtat 41937374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 44179006 - 44179090
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||| ||||||||||||||||| ||||||||||| | | ||||||||||||    
T  44179006 tctcatatacttacccgttaccctacccatacccaacgtggatgagaaattgaatctcatccccgtccccgacaggttcgggtat 44179090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 44252420 - 44252504
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  44252420 tctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 44252504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 7470187 - 7470120
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| |||||||||||    
T  7470187 tctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtcc 7470120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 42758079 - 42758146
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||| | |||||||||||    
T  42758079 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaaccccatccccgtcc 42758146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 44953810 - 44953760
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||||| ||||||||| | | | ||||||||||||    
T  44953810 aacggggatgagaaattgaatcacatccccgttcccgacaggttcgggtat 44953760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 1772820 - 1772739
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattc 372  Q
    |||||||||| |||||||||   |||   ||||||||||||||||||||||  |||| ||||| |||| | |||||||||||    
T  1772820 tatacttacccgttaccctacgcatacccaacggggatgagaaattgaatcttatcctcgtccccaatggattcgggtattc 1772739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 34154130 - 34154179
Alignment:
Q  321 acggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  34154130 acggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 34154179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 49025361 - 49025426
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgt 351  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| |||| ||||    
T  49025361 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatcacatcaccgt 49025426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Original strand, 52572327 - 52572360
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||||||||||||||||| |||||||||||    
T  52572327 aacggggatgagaaattgaatcccatccccgtcc 52572360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 23154416 - 23154332
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||| | |||||||||   ||||| ||||||||||||||||| |||| ||||| ||||| | |  |||||||||||    
T  23154416 tctcatatacttatccgttaccctacccatattcaacggggatgagaaattaaatctcatcctcgtccccgacgggttcgggtat 23154332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 31127204 - 31127120
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||||  |||||| ||||||||||||| | ||||||||||| | |  |||||||||||    
T  31127204 tctcatatacttacccgttaccctacccatatccaacgggaatgagaaattgaaccccatccccgtccccgacgggttcgggtat 31127120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 373
Target Start/End: Complemental strand, 15174342 - 15174195
Alignment:
Q  226 tagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggg 325  Q
    |||||||| || | ||| |||||||||||  |||| | ||||||||||  |||| |  |||| | ||||||||||||||||||||   ||||| || |||    
T  15174342 tagacatgacattggggcggggtggggataggtttcgccttccccatcaccatccccgactcccatatacttacctgttaccctacccatattcaatggg 15174243  T
Q  326 gatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||||||||||  |||||||||| |||| ||||||||||||||    
T  15174242 gatgagaaattgaatcttatccccgtccccaatgggttcgggtattcc 15174195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 373
Target Start/End: Complemental strand, 15069045 - 15068930
Alignment:
Q  258 ttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaa 357  Q
    ||||| |||||| |||  |||| | ||||| | ||||||||||||||||||||   |||   |||||||||||||||||||||| ||| ||||||| |||    
T  15069045 ttttgccttcccaatccccatcccctactcccatatacttacctgttaccctacccatacccaacggggatgagaaattgaatctcattcccgtccccaa 15068946  T
Q  358 taggttcgggtattcc 373  Q
    | ||||||||||||||    
T  15068945 tgggttcgggtattcc 15068930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 370
Target Start/End: Complemental strand, 34301627 - 34301479
Alignment:
Q  222 caagtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaa 321  Q
    ||||||| ||||||||| ||| |||||||||| | |||||  ||||||||||  |||  |  | | || ||||||||||||||||||||   |||   ||    
T  34301627 caagtaggcatggcaatggggcggggtggggacgggttttaccttccccatccccatacccgattatcatatacttacctgttaccctacccatacccaa 34301528  T
Q  322 cggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  34301527 cggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 34301479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 2184026 - 2183967
Alignment:
Q  314 atatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||| |||||||||||||||||||||  ||||||||||| |||| ||||||||||||||    
T  2184026 atattcaacggggatgagaaattgaatttcatccccgtccccaatgggttcgggtattcc 2183967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 368
Target Start/End: Original strand, 17220396 - 17220478
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggt 368  Q
    |||| |||||||||| ||||||||||  ||||  ||| |||||||||||||||||| ||||||||||| | || |||||||||    
T  17220396 tctcatatacttacccgttaccctatccatatccaacagggatgagaaattgaatcccatccccgtccccgatgggttcgggt 17220478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 1063188 - 1063272
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||  ||||   |||||||||||||||||||||| ||||||| ||| | || |||||||||||    
T  1063188 tctcatatacttacccgttaccctacctatacccaacggggatgagaaattgaatctcatccccatccccgatgggttcgggtat 1063272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 11255414 - 11255330
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||| | ||||||||||  ||| | |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  11255414 tctcatatacttatccgttaccctatccatactcaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 11255330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 24870432 - 24870348
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||||||| || |||| ||||||    
T  24870432 tctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtcctcgatgggtttgggtat 24870348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 28977518 - 28977439
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||||||||||   |||   |||||||||||||||||||||| ||||| ||||| |||  |||||||||||    
T  28977518 tatacttacctgttaccctacccatacccaacggggatgagaaattgaatcacatccacgtccccaacgggttcgggtat 28977439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 6388977 - 6388907
Alignment:
Q  283 tactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    ||||||| ||||||||||||||||||||   ||||  | |||||||||||||| ||||| |||||||||||    
T  6388977 tactctcatatacttacctgttaccctacccatatccagcggggatgagaaatcgaatctcatccccgtcc 6388907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 355
Target Start/End: Complemental strand, 5858866 - 5858797
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctc 355  Q
    |||| |||||||||| |||||| ||   ||||| |||||||||||||||||||| | |||||||||||||    
T  5858866 tctcatatacttacccgttaccttacccatattcaacggggatgagaaattgaacctcatccccgtcctc 5858797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 4594604 - 4594508
Alignment:
Q  257 gttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||| |||||||||| ||||| | | ||| | ||||||||||  ||| |||||  ||||  |||||||||||||||||||||| ||||| |||||    
T  4594604 gttttgccttccccatcctcatcccctgctcccatatacttacccattatcctatccatatccaacggggatgagaaattgaatctcatcctcgtcc 4594508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 14186023 - 14186103
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgg 366  Q
    |||| |||||||||| ||||||||| | |||  ||||||||||||||||||||| | ||| ||||||| | || |||||||    
T  14186023 tctcatatacttacccgttaccctacacatacctaacggggatgagaaattgaaccccatacccgtccccgatgggttcgg 14186103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 24927628 - 24927712
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  24927628 tctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 24927712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 34776141 - 34776221
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgg 366  Q
    |||| |||| |||||||||| ||||   ||||  |||||||||||||||||||||| ||||||||||| |||  |||||||    
T  34776141 tctcatatatttacctgttaacctacccatatccaacggggatgagaaattgaatctcatccccgtccccaacgggttcgg 34776221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 2076245 - 2076178
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| |||||||||||    
T  2076245 tctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtcc 2076178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 349
Target Start/End: Complemental strand, 2190347 - 2190228
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| ||| ||| || | |||| ||||||||||||  |||| | ||||  | |||||||| | |||||||||   ||||  ||||||||||    
T  2190347 catggcaatggggcgggatggagacgtgtttcgtcttccccatccccatcccatacttccatatacttatccgttaccctacccatatccaacggggatg 2190248  T
Q  330 agaaattgaatcgcatcccc 349  Q
    |||||||||||| |||||||    
T  2190247 agaaattgaatctcatcccc 2190228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 370
Target Start/End: Complemental strand, 39446034 - 39445887
Alignment:
Q  223 aagtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaac 322  Q
    |||||||||||  ||| ||| |||||||||| |||||||  |||| || ||  |||  || | |||| |||||||||| |||||||||   |||  |||     
T  39446034 aagtagacatgataatggggcggggtggggacgagttttaccttctccgtccccatacctgattctcatatacttacccgttaccctacccatacctaat 39445935  T
Q  323 ggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    | ||||||||||||||||| ||||||||||| | |  |||||||||||    
T  39445934 gaggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 39445887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 8030833 - 8030882
Alignment:
Q  324 gggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||| |||||||||||| |||||||||||  ||| ||||||||||||||    
T  8030833 gggataagaaattgaatctcatccccgtcccaaattggttcgggtattcc 8030882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 36132296 - 36132240
Alignment:
Q  314 atatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||| |||||||||||||||||||||| ||||| | ||| | | ||||||||||||    
T  36132296 atattcaacggggatgagaaattgaatctcatccacatccccgacaggttcgggtat 36132240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 352
Target Start/End: Original strand, 10920286 - 10920408
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | ||||| |||||||||||  |||  | || |||| ||||||||||||||||||||   ||||  ||||||||||    
T  10920286 catggcaatggggcggggtggggacgggttttatcttccccatctccataccctattctcatatacttacctgttaccctacccatatccaacggggatg 10920385  T
Q  330 agaaattgaatcgcatccccgtc 352  Q
    |||||||||||| ||||||||||    
T  10920386 agaaattgaatcccatccccgtc 10920408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 18485323 - 18485403
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtatt 371  Q
    ||||||||||||||||||||   ||||  |||||||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  18485323 tatacttacctgttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccaatgggttcgggtatt 18485403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 373
Target Start/End: Original strand, 3546764 - 3546907
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |  ||||||| | |||||| ||||||||||  |||| | ||||||| ||||||||||  |||||||||  |||  |||||||||||    
T  3546764 catggcaatggggcgatgtggggacgggttttgccttccccatccccatcccctactctcatatacttaccccttaccctatccatagctaacggggatg 3546863  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||| ||||||| ||| |||| ||||  ||||||||    
T  3546864 agaaattgaatctcatccccatccccaatgggttatggtattcc 3546907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 371
Target Start/End: Original strand, 4427527 - 4427669
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatat-atatttaacggggat 328  Q
    ||||||||| |||  ||||||||| |||||||| |||||||||| ||||  | ||||| | |||| |||| ||||||||||    ||||  || ||||||    
T  4427527 catggcaatggggcagggtggggacgagttttgccttccccatcctcattccctactcccatatagttacatgttaccctaacccatatccaatggggat 4427626  T
Q  329 gagaaattgaatcgcatccccgtcctcaataggttcgggtatt 371  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||    
T  4427627 gagaaattgaatcacatccccgtccccaatgggttcgggtatt 4427669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 373
Target Start/End: Complemental strand, 38343013 - 38342867
Alignment:
Q  227 agacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacgggg 326  Q
    ||||||| |||| ||| |||||||||| |  ||||||| ||||||||  |||| | ||||| | |||| ||| | |||||||||   ||||| |||||||    
T  38343013 agacatgacaatggggcggggtggggacggattttgtcatccccatccccatcccctactcacatatatttatccgttaccctacccatattcaacgggg 38342914  T
Q  327 atgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||| |||| |||| ||||||  ||| ||||| ||||||||    
T  38342913 atgagaaattaaatctcatctccgtccctaatgggttccggtattcc 38342867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 373
Target Start/End: Original strand, 44057538 - 44057620
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||| |||||||||   ||||   |||||||||| |||||||||| ||||||||||| |||| ||||||||||||||    
T  44057538 tatacttacccgttaccctactcatatccgacggggatgaaaaattgaatctcatccccgtccccaatgggttcgggtattcc 44057620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 10208839 - 10208755
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  10208839 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 10208755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 45256519 - 45256587
Alignment:
Q  302 gttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||  ||||| ||||||||||||||||||||||| ||||||||||| | || |||| ||||||    
T  45256519 gttaccctacctatatctaacggggatgagaaattgaatctcatccccgtccccgatgggtttgggtat 45256587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 9632082 - 9632161
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||||| |||  |||||||||||    
T  9632082 tatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccaacgggttcgggtat 9632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 18106488 - 18106422
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtc 352  Q
    |||||||||||||||||||||||||   ||||  |||||||||||||| || |||| ||||||||||    
T  18106488 tctcgtatacttacctgttaccctacccatatccaacggggatgagaagttaaatctcatccccgtc 18106422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 36128580 - 36128450
Alignment:
Q  223 aagtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaac 322  Q
    |||||| ||||||||| ||| |||||||||| | |||||  ||||||| ||  ||| ||  | |||| |||||||||| |||||||||   |||   |||    
T  36128580 aagtaggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatatccgattctcatatacttacccgttaccctacccatacccaac 36128481  T
Q  323 ggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||| |||||||||| |||||||||||    
T  36128480 ggggatgaaaaattgaatctcatccccgtcc 36128450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 26755447 - 26755500
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||||||||||||||||||| ||||||||||| ||||   ||||||||||||    
T  26755447 aacggggatgagaaattgaatctcatccccgtccccaatcaattcgggtattcc 26755500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 13830415 - 13830499
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||| ||||||||   |||   |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  13830415 tctcatatacttacctattaccctacccatacccaacggggatgagaaattgaatcacatccccgtccccgacgggttcgggtat 13830499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 43371195 - 43371311
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| | | |||||||||| | |||||| ||||||||||  |||| ||||||| | |||||||| | |||||||||   ||||  ||| || |||    
T  43371195 catggcaatggagcggggtggggacgggttttgccttccccatccccatcccttactcccatatacttatccgttaccctactcatatccaacaggcatg 43371294  T
Q  330 agaaattgaatcgcatc 346  Q
    |||||||||||| ||||    
T  43371295 agaaattgaatctcatc 43371311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 353
Target Start/End: Original strand, 15546317 - 15546440
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||  |||||||||| | |||||  ||||||||||  |||  | || |||| |||||||||| |||||||||  |||||  || |||||||    
T  15546317 catggcaatgggtcggggtggggacgggttttaccttccccatccccataccctattctcatatacttacccgttaccctacctatatccaatggggatg 15546416  T
Q  330 agaaattgaatcgcatccccgtcc 353  Q
    |||||||||| | | |||||||||    
T  15546417 agaaattgaaccccttccccgtcc 15546440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 37473134 - 37473055
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||||||||||   |||   |||||||||||||||||||||| ||||||| ||| | |  |||||||||||    
T  37473134 tatacttacctgttaccctacccatacccaacggggatgagaaattgaatctcatccccatccccgacgggttcgggtat 37473055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 19105249 - 19105199
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaatt 336  Q
    |||| |||||||| |||||||||||  ||||| ||||||||||||||||||    
T  19105249 tctcatatacttatctgttaccctacttatatctaacggggatgagaaatt 19105199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 24414507 - 24414457
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  24414507 aacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 24414457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 30846658 - 30846708
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  30846658 aacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 30846708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 13705771 - 13705706
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgt 351  Q
    |||| |||||||| | |||||||||   ||||  |||||||||||||||||||||| |||||||||    
T  13705771 tctcatatacttatccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgt 13705706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 22900424 - 22900533
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgc 343  Q
    |||||||||| |||||||  |||||| ||| ||||  | || |||| |||||||||| |||||||||   |||   |||||||||||||||| ||| | |    
T  22900424 ggggtggggacgagttttaccttccctatcctcataccctattctcatatacttacccgttaccctacccatacccaacggggatgagaaatcgaacccc 22900523  T
Q  344 atccccgtcc 353  Q
    ||||||||||    
T  22900524 atccccgtcc 22900533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 42798398 - 42798333
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgt 351  Q
    |||| |||||||| ||||||||||| | |||   ||||||||||| |||||||||| |||||||||    
T  42798398 tctcatatacttatctgttaccctacacatacccaacggggatgataaattgaatcacatccccgt 42798333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 7315023 - 7314975
Alignment:
Q  322 cggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  7315023 cggggatgagaaattgaatcacatccccgtccccgacgggttcgggtat 7314975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 8916345 - 8916261
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||| ||||||||||||||||| ||||||||||| | |  |||||||||||    
T  8916345 tctcatatacttacccgttaccctacccatacccaacgaggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 8916261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 37999198 - 37999230
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtc 352  Q
    |||||||||||||||||||||| ||||||||||    
T  37999198 aacggggatgagaaattgaatctcatccccgtc 37999230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 353
Target Start/End: Original strand, 210996 - 211105
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgc 343  Q
    |||||| ||||| |||||| ||||| | || ||||| | ||||| ||||||||||||||||||||||  ||||   |||||||||||||||||||||| |    
T  210996 ggggtgtggatgggttttgccttccacgtcctcatcccctactcccgtatacttacctgttaccctacctatacccaacggggatgagaaattgaatctc 211095  T
Q  344 atccccgtcc 353  Q
    ||||||||||    
T  211096 atccccgtcc 211105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1630 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1630
Description:

Target: scaffold1630; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 1246 - 1362
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    |||||||||||||||||||||||| | |||||  ||||||| ||  ||| ||| | |||| |||||||| ||||||||||||  |||  |||||||||||    
T  1246 catggcaattgggtggggtggggacgggttttaccttccccgtccccatgtctgattctcatatacttatctgttaccctatccatacctaacggggatg 1345  T
Q  330 agaaattgaatcgcatc 346  Q
    |||||||||||| ||||    
T  1346 agaaattgaatctcatc 1362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 245 - 353
Target Start/End: Original strand, 19892589 - 19892697
Alignment:
Q  245 gggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgca 344  Q
    |||| ||||||||||||  ||||||||||  |||| | ||||||| ||||||||| ||||||||||   |||  ||||||||||||||||||||||| ||    
T  19892589 gggtagggatgagtttttccttccccatccccatcccctactctcatatacttacttgttaccctacccatacataacggggatgagaaattgaatctca 19892688  T
Q  345 tccccgtcc 353  Q
    |||||||||    
T  19892689 tccccgtcc 19892697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 373
Target Start/End: Complemental strand, 10450487 - 10450405
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||||| |||||||||||  ||||  |||||||||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  10450487 tatacttacatgttaccctatcaatatccaacggggatgagaaattgaatcccgtccccgtccttaatgggttcgggtattcc 10450405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 24710537 - 24710621
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||||||||||||||  |||| | |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  24710537 tctcatatacttacctgttaccctacctatactcaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 24710621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 373
Target Start/End: Complemental strand, 48024680 - 48024590
Alignment:
Q  283 tactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    ||||||| ||||||||  ||||| |||||  ||| | |||| |||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  48024680 tactctcatatacttatttgttatcctattcatactcaacgaggataagaaattgaatctcatccccgtccacaataggttcgggtattcc 48024590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 373
Target Start/End: Complemental strand, 16237745 - 16237648
Alignment:
Q  276 catctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattcc 373  Q
    |||||| ||||||| |||||||| | | |||||||  |||||  ||||| |||||||||||||||| |||||| |||| |||| ||||||||||||||    
T  16237745 catctcctactctcatatacttatccgctaccctacctatatccaacggagatgagaaattgaatctcatccctgtccccaatgggttcgggtattcc 16237648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 370
Target Start/End: Complemental strand, 36187687 - 36187547
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | |||||  ||||||| ||  ||| ||  | ||||||||||||||| |||||||||   |||   ||||||||||    
T  36187687 catggcaatggggcggggtggggacgggttttaccttccccgtccccatatccgattctcgtatacttacccgttaccctacccatacccaacggggatg 36187588  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||| ||||||||||| | || | |||||||||    
T  36187587 agaaattgaatcccatccccgtccccgatggattcgggtat 36187547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 23493734 - 23493667
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   ||||| |||||||||||||||||||||| |||||||||||    
T  23493734 tctcatatacttacccgttaccctacccatattcaacggggatgagaaattgaatcccatccccgtcc 23493667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 370
Target Start/End: Complemental strand, 17092425 - 17092285
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | |||||  ||||| | || |||| ||  | |||| ||| |||||| ||||||||| | ||||  ||| ||||||    
T  17092425 catggcaatggggcggggtggggacgggttttaccttcctcgtcctcatatccgattctcatatgcttacccgttaccctacacatatccaacagggatg 17092326  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||| ||||||||||| | |  |||||||||||    
T  17092325 agaaattgaatctcatccccgtccccgacgggttcgggtat 17092285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 20774311 - 20774395
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  20774311 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 20774395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 44615878 - 44615818
Alignment:
Q  293 tacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||| |||||||||   |||||||||||||||||||||||||| | |||||||||||    
T  44615878 tacttacccgttaccctacccatatttaacggggatgagaaattgaaccccatccccgtcc 44615818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 3628384 - 3628317
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    ||||||||||||||| ||||||||||  |||   ||||||||| |||||||||||| |||||||||||    
T  3628384 tctcgtatacttacccgttaccctatccatacccaacggggataagaaattgaatctcatccccgtcc 3628317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 349
Target Start/End: Complemental strand, 35077641 - 35077550
Alignment:
Q  258 ttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatcccc 349  Q
    |||||||||||||||| ||||| | | ||| | ||||||||||||||||||||   |||   ||||| |||||||||||||||| |||||||    
T  35077641 ttttgtcttccccatcctcatcccctgctcccatatacttacctgttaccctacccatacccaacggagatgagaaattgaatctcatcccc 35077550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 42440044 - 42439977
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| |||||||||||    
T  42440044 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatcacatccccgtcc 42439977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 50427063 - 50426996
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   ||||| |||| ||||||||||||||||| |||||||||||    
T  50427063 tctcatatacttacccgttaccctacccatattcaacgaggatgagaaattgaatctcatccccgtcc 50426996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 51421574 - 51421641
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| |||||||||||    
T  51421574 tctcatatacttacccgttaccctactcatatccaacggggatgagaaattgaatctcatccccgtcc 51421641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 382
Target Start/End: Original strand, 44792684 - 44792781
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcat-ccccgtcctcaataggttcgggtattccgacttcatc 382  Q
    |||| |||||||||| |||||||||   ||||| |||||||||||||||||||| | ||| |||||||| | |  |||||||||||||| ||| ||||    
T  44792684 tctcatatacttacccgttaccctacccatattcaacggggatgagaaattgaaccccatcccccgtccccgacgggttcgggtattcccactccatc 44792781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 13390134 - 13390218
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||| | |||||||||   ||||  |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  13390134 tctcatatacttaaccgttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 13390218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 29936096 - 29936180
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||| |||||| |||||||||   ||||  |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  29936096 tctcatatgcttacccgttaccctacccatatccaacggggatgagaaattgaatcacatccccgtccccgacgggttcgggtat 29936180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 32594580 - 32594659
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||| | | || |||||||||||    
T  32594580 tatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtacccgatgggttcgggtat 32594659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 49742314 - 49742263
Alignment:
Q  302 gttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    ||||||||||  |||| ||||||||||||||||||||| | |||||||||||    
T  49742314 gttaccctatccatatctaacggggatgagaaattgaacctcatccccgtcc 49742263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 13020371 - 13020421
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatc 341  Q
    |||||||||| |||||||||  |||| | ||||||||||||||||||||||    
T  13020371 tatacttacccgttaccctacctatactcaacggggatgagaaattgaatc 13020421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 18354480 - 18354418
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccc 348  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| ||||||    
T  18354480 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatcacatccc 18354418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 19572899 - 19572837
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||||| |||||||||   |||   |||||||||||||||||||||| |||||||||||    
T  19572899 tatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtcc 19572837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 7997311 - 7997399
Alignment:
Q  282 ttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||| ||||||||||| |||   |||  |||| ||||||||||||| |||| |||| |||||| |||  ||| |||||||    
T  7997311 ttactctcgtatatttacctgttactctacccatacctaactgggatgagaaatttaatcccatcaccgtccccaacgggtccgggtat 7997399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 14902802 - 14902850
Alignment:
Q  322 cggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||| ||||| ||||||||||||| || |||||||||||    
T  14902802 cgggaatgagaaatagaatctcatccccgtcctcgatgggttcgggtat 14902850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 17134626 - 17134706
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgg 366  Q
    |||| |||||||||| |||||||||   ||| | ||| |||||||||||||||||| |||| |||||| |||  |||||||    
T  17134626 tctcatatacttacccgttaccctactcatactcaacagggatgagaaattgaatctcatctccgtccccaacgggttcgg 17134706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 34060401 - 34060345
Alignment:
Q  314 atatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||| |||| ||||||||||||||||| |||||||||||   || |||||||||||    
T  34060401 atattcaacgaggatgagaaattgaatctcatccccgtccctgatgggttcgggtat 34060345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 34673668 - 34673604
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccg 350  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||| | ||||||||    
T  34673668 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaacctcatccccg 34673604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 56364 - 56241
Alignment:
Q  250 gggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatcccc 349  Q
    |||||| |||||| ||||||||||  |||| | ||||| | |||||||||| |||||||||   ||||  ||| |||||||||||||||||| ||||||     
T  56364 gggatgggttttgccttccccatccccatcccctactcccatatacttacccgttaccctacccatatccaacagggatgagaaattgaatctcatccct 56265  T
Q  350 gtcctcaataggttcgggtattcc 373  Q
     ||| |||| ||||||||||||||    
T  56264 atccccaatgggttcgggtattcc 56241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 353
Target Start/End: Complemental strand, 10188539 - 10188416
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| |||||||  ||||||||||  |||  |  | |||| ||||||||||||||||||||   |||   ||||||||||    
T  10188539 catggcaatggggcggggtggggacgagttttaccttccccatccccatacccgattctcatatacttacctgttaccctacccatacccaacggggatg 10188440  T
Q  330 agaaattgaatcgcatccccgtcc 353  Q
    |||||||||||| |||||||||||    
T  10188439 agaaattgaatcccatccccgtcc 10188416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 370
Target Start/End: Original strand, 30815870 - 30816014
Alignment:
Q  225 gtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacgg 324  Q
    |||| ||||||||| ||| |||||||||||| |||||   |||||| ||  |||  || | |||| |||||||||| |||||||||| |||||  ||| |    
T  30815870 gtaggcatggcaat-gggcggggtggggatgggttttacattccccgtctccatacctgattctcatatacttacccgttaccctatctatatccaacag 30815968  T
Q  325 ggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||||| | ||||||||||||| |  |||||||||||    
T  30815969 ggatgagaaattgaaccccatccccgtcctcgacgggttcgggtat 30816014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 29200277 - 29200225
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattc 372  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  29200277 aacggggatgagaaattgaatctcatccccgtccccaatgggttcgggtattc 29200225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 370
Target Start/End: Complemental strand, 10142989 - 10142842
Alignment:
Q  223 aagtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaac 322  Q
    |||||| ||||||||| ||| ||| | |||| |||||||  ||||||| |  |||| ||  | ||||||||||||||| |||||||||   ||| | |||    
T  10142989 aagtaggcatggcaatggggcgggatagggacgagttttaccttccccgttctcatatccgattctcgtatacttacccgttaccctacccatactcaac 10142890  T
Q  323 ggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    ||||||||||||||||||| ||||| ||||| | |  |||||||||||    
T  10142889 ggggatgagaaattgaatcccatcctcgtccccgacgggttcgggtat 10142842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 373
Target Start/End: Original strand, 18908523 - 18908637
Alignment:
Q  259 tttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaat 358  Q
    |||| ||||||||||  |||| ||||||| | | || |||||||||||||||   |||  ||| |||||||||||| |||||| ||||||| ||||||||    
T  18908523 tttgccttccccatccccatcccttactcccatgtatttacctgttaccctaaccatacctaagggggatgagaaactgaatctcatccccatcctcaat 18908622  T
Q  359 aggttcgggtattcc 373  Q
     |||| |||||||||    
T  18908623 gggtttgggtattcc 18908637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 370
Target Start/End: Original strand, 2366949 - 2367089
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | |||||  ||||| ||||  ||| ||  | |||| ||||||||| ||||||||||   |||   ||||||||||    
T  2366949 catggcaatggggcggggtggggacgggttttaccttcctcatccccatatccgattctcatatacttacatgttaccctactcatacccaacggggatg 2367048  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||| ||||||||||| | |  |||||||||||    
T  2367049 agaaattgaatctcatccccgtccccgacgggttcgggtat 2367089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 370
Target Start/End: Complemental strand, 5863837 - 5863697
Alignment:
Q  230 catggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatg 329  Q
    ||||||||| ||| |||||||||| | |||||  ||||||| ||  |||  || | |||| |||||||||| |||||||||   |||   ||||||||||    
T  5863837 catggcaatggggcggggtggggacgggttttaccttccccgtccccatacctgattctcatatacttacccgttaccctacccatacccaacggggatg 5863738  T
Q  330 agaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||| ||||||||||| | |  |||||||||||    
T  5863737 agaaattgaatctcatccccgtccccgacgggttcgggtat 5863697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 372
Target Start/End: Original strand, 9457940 - 9458068
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgc 343  Q
    |||||||||| | |||||||||||||||||  | || | ||||||  ||||||||  ||||| ||||   ||||  |||| |||||| |||| ||||| |    
T  9457940 ggggtggggacgggttttgtcttccccatccccgtcccctactcttatatacttatatgttatcctacccatatccaacgaggatgacaaatagaatccc 9458039  T
Q  344 atccccgtcctcaataggttcgggtattc 372  Q
    ||||||||||||||| |||||| ||||||    
T  9458040 atccccgtcctcaatgggttcgagtattc 9458068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 32052735 - 32052801
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtc 352  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||||| ||||||||||    
T  32052735 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtc 32052801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 3484332 - 3484248
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||||||   |||   |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  3484332 tctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtat 3484248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 9442328 - 9442412
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||||| |||||| ||   ||||  |||||||||||||||||||||| ||| ||||||||| |  |||||||||||    
T  9442328 tctcatatacttacccgttaccttacccatatccaacggggatgagaaattgaatctcattcccgtcctcgacgggttcgggtat 9442412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 9458335 - 9458439
Alignment:
Q  244 ggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgc 343  Q
    |||||||||| | |||||  ||||||||||  |||| | ||||| | |||||||||| |||||||||   |||   |||||||||||||||||||||| |    
T  9458335 ggggtggggacgggtttttccttccccatccccatcccctactcccatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctc 9458434  T
Q  344 atccc 348  Q
    |||||    
T  9458435 atccc 9458439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 14505778 - 14505845
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||| |||||||||| |||||||||   ||||  |||||||||||||||||||| | |||||||||||    
T  14505778 tctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaaccccatccccgtcc 14505845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 27534408 - 27534458
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  27534408 aacggggatgagaaattgaatcacatccccgtccccgacgggttcgggtat 27534458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 253203 - 253163
Alignment:
Q  312 atatatttaacggggatgagaaattgaatcgcatccccgtcc 353  Q
    |||||||||||||| ||||||||||||||| |||||||||||    
T  253203 atatatttaacggg-atgagaaattgaatctcatccccgtcc 253163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 256954 - 256878
Alignment:
Q  294 acttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||  ||||||||  ||||| ||||| ||||||||||||||||| ||||| ||||| |||   ||||||||||    
T  256954 acttaccatttaccctacctatatctaacgaggatgagaaattgaatctcatcctcgtccccaacgagttcgggtat 256878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 7978773 - 7978721
Alignment:
Q  318 ttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||||||| ||||  ||||||| ||| ||| ||||||||||||    
T  7978773 ttaacggggatgagaaatcgaataccatccccatccccaacaggttcgggtat 7978721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 14254639 - 14254723
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| ||||||||| ||||||||||   ||||  |||  ||||||||||||||||| ||||||||||| | |  |||||||||||    
T  14254639 tctcatatacttacatgttaccctactcatatcgaacatggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 14254723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 32959585 - 32959633
Alignment:
Q  322 cggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||||||||||||| ||||| ||||||||||| |||  |||||||||||    
T  32959585 cggggatgagaaatcgaatctcatccccgtccccaacgggttcgggtat 32959633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 9981 - 10065
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    |||| |||||||| | ||||||||||  ||| | |||||||||||||||||||||| ||||||||||| | |  |||||||||||    
T  9981 tctcatatacttatccgttaccctatccatactcaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 10065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 67410 - 67488
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggta 369  Q
    |||| |||||||||||||||   ||||| || ||||||||||||||||||| ||||||| | | |||| ||||||||||    
T  67410 tatatttacctgttaccctacccatattcaatggggatgagaaattgaatctcatccccattcccaatgggttcgggta 67488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 75253 - 75331
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggta 369  Q
    |||| |||||||||||||||   ||||| || ||||||||||||||||||| ||||||| | | |||| ||||||||||    
T  75253 tatatttacctgttaccctacccatattcaatggggatgagaaattgaatctcatccccattcccaatgggttcgggta 75331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 21145 - 21088
Alignment:
Q  292 atacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatcccc 349  Q
    |||||||||||||| |||||| |||||||||||||||||| | | ||||| |||||||    
T  21145 atacttacctgttatcctatacatatttaacggggatgagtattcgaatcccatcccc 21088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 3971 - 4020
Alignment:
Q  320 aacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggta 369  Q
    |||||||||||||||||||||| ||||||||||| | || ||||||||||    
T  3971 aacggggatgagaaattgaatcacatccccgtccccgatgggttcgggta 4020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 370
Target Start/End: Complemental strand, 32996 - 32849
Alignment:
Q  223 aagtagacatggcaattgggtggggtggggatgagttttgtcttccccatcgtcatctcttactctcgtatacttacctgttaccctatatatatttaac 322  Q
    |||||||||||  ||| ||| |||||||||| |||||||  |||| || ||  |||  || | |||| |||||||||| |||||||||   |||  |||     
T  32996 aagtagacatgataatggggcggggtggggacgagttttaccttctccgtccccatacctgattctcatatacttacccgttaccctacccatacctaat 32897  T
Q  323 ggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtat 370  Q
    | ||||||||||||||||| ||||||||||| | |  |||||||||||    
T  32896 gaggatgagaaattgaatctcatccccgtccccgacgggttcgggtat 32849  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 14456 - 14509
Alignment:
Q  286 tctcgtatacttacctgttaccctatatatatttaacggggatgagaaattgaa 339  Q
    |||| ||||||||| ||||||||||   ||||| ||||||||||||||||||||    
T  14456 tctcatatacttacttgttaccctacccatattcaacggggatgagaaattgaa 14509  T

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Target: scaffold0135 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 35838 - 35931
Alignment:
Q  291 tatacttacctgttaccctatatatatttaacggggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattccgacttcatctc 384  Q
    ||||||| || |||||||||   ||||  |||||||||||||||||||| | ||||||||| | | |  ||||||||||||||  |||||||||    
T  35838 tatacttgcccgttaccctactcatatccaacggggatgagaaattgaaccacatccccgttcccgacgggttcgggtattcccgcttcatctc 35931  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 128483 - 128426
Alignment:
Q  325 ggatgagaaattgaatcgcatccccgtcctcaataggttcgggtattccgacttcatc 382  Q
    ||||| ||||||||||  |||||| |||| ||||||||||||||||||| || |||||    
T  128483 ggatgtgaaattgaattccatccctgtccccaataggttcgggtattcccacctcatc 128426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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