View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17163_low_2 (Length: 439)
Name: NF17163_low_2
Description: NF17163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17163_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 4764487 - 4764905
Alignment:
| Q |
18 |
atttcctttataaaagaatgaagaccacaaaattgtttggcatgcaaaataatattggtaaactggggagtgggaaaacctaacatattcaaaatgccac |
117 |
Q |
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| T |
4764487 |
atttcctttataaaagaatgaagaccacaaaattgtttggcatgcaaaataatattggtaaactggggagtgggaaaacctaacatattcaaaatgccac |
4764586 |
T |
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| Q |
118 |
tcaaacacttctagataaaaggacgattaagaaataaatgatttgaattttatnnnnnnnnttatatgactggnnnnnnntccgccgctcctagggttag |
217 |
Q |
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| T |
4764587 |
tcaaacacttctagataaaaggacgattaagaaataaatgatttgaattttat-aaaaaaattatatcactggaaaaaaagccgccgctcctagggttag |
4764685 |
T |
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| Q |
218 |
tgtcgccgctcccttgtgagggattctgctgtggtttggtgagatatctgctcctcttaacgttttttgtttccacttcatagagataaaaggtgcttcc |
317 |
Q |
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| T |
4764686 |
cgtcgccactcccttgtgagggattctgttgtggtttggtgagatatctgctcctcttaacgttttttgtttccacttcatagagataaaaggtgcttcc |
4764785 |
T |
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| Q |
318 |
actttcnnnnnnncctcggatcatgttatgatcccgtgatcc--------------tggcatcatatacattttcattacaagaacaaaaggtgttatta |
403 |
Q |
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| T |
4764786 |
actttcttttcttcctcggatcatgttatgatcccgtgatccctttcttttccaattggcatcatataca-tttcattacaagaacaaaaggtgttatta |
4764884 |
T |
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| Q |
404 |
tctctcttatgttctcctatg |
424 |
Q |
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| T |
4764885 |
tctctcttatgttctcctatg |
4764905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 4670407 - 4670441
Alignment:
| Q |
122 |
acacttctagataaaaggacgattaagaaataaat |
156 |
Q |
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| T |
4670407 |
acacttctagataaaaggacaattaagaaataaat |
4670441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 19061338 - 19061253
Alignment:
| Q |
199 |
ccgccgctcctagggttagtgtcgccgct-cccttgtgagggattctgctgtggtttggtgagatatctgctcctcttaacgtttt |
283 |
Q |
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| T |
19061338 |
ccgccgctcctagggttcttgccgccgctacccttgtgagggattttgccgtcgttcgttgagatttcttctcccctgaacgtttt |
19061253 |
T |
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