View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17163_low_5 (Length: 286)
Name: NF17163_low_5
Description: NF17163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17163_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 170845 - 170575
Alignment:
| Q |
1 |
taaacaaattgttgagtcaattcactgagaatacaacttatagctacctcattctgaagtgctgaagatgcagttcctcggtcttttggttcaatagcaa |
100 |
Q |
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| T |
170845 |
taaacaaattgttgagtcaattcactgagaatacaacttatagctacctcattctgaagtgctgaagatgcagttcctcggtcttttggttcaatagcaa |
170746 |
T |
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| Q |
101 |
gtaagacttccaagaggctcagcaccgatgaaggaaaattcttgaatgtctcagaaacaacacgtttgtaaggttgttgaggtttaaaaattgtcgcatg |
200 |
Q |
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| T |
170745 |
gtaagacttccaagaggctcagcgccgatgaaggaaaattcttgaatgtctcagaaacaacacgtttgtaaggttgttgaggtttaaaaattgtcgcatg |
170646 |
T |
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| Q |
201 |
tggtagcattgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttgct |
271 |
Q |
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| T |
170645 |
tggtagctttgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttgct |
170575 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 49214571 - 49214666
Alignment:
| Q |
174 |
ttgttgaggtttaaaaattgtcgcatgtggtagcattgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttg |
269 |
Q |
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| T |
49214571 |
ttgttgtggcttaaaaattgtagcatgtggcaactttgcctttttccaatattcttcagaaggagaaccacatagcttaaatatcttatgtagttg |
49214666 |
T |
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