View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17163_low_7 (Length: 248)
Name: NF17163_low_7
Description: NF17163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17163_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 14789886 - 14789655
Alignment:
| Q |
7 |
tcataaaggtcactatctaatgttctttctttgataaggagtacacatata-accaacaagagaacaaaaggatgcaaattagttgaaggaaggaattat |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14789886 |
tcataaaggtcactatctaatgttctttctttgataaggagtacacatatataccaacaagagaacaaaag-atgcaaattagttgaaggaaggaattat |
14789788 |
T |
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| Q |
106 |
ggnnnnnnnctcccaacattgtttgtcccttgtgcccttcttgtctaccttgttttcaacactagcatatgaacatcttctctcttggattggtcacaaa |
205 |
Q |
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| T |
14789787 |
ggtttttttctcccaacattatttgtcccttgtgcccttcttgtctaccttgttttcaacactagcatatgaacatcttctctcttggattggtcacaaa |
14789688 |
T |
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| Q |
206 |
atttagtaaatgtcaatgactttttatagaata |
238 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
14789687 |
atttagtaaatgtcaatgactttttatagaata |
14789655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 17542666 - 17542895
Alignment:
| Q |
7 |
tcataaaggtcactatctaatgttctttctttgataaggagtacacatata-accaacaagagaacaaaaggatgcaaattagttgaaggaaggaattat |
105 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17542666 |
tcataaaggtcactatctaatgttctttcgttgataaggagtacacatatataccaacaagagaacaaa-ggatgcaaattagttgaaggaaggaattat |
17542764 |
T |
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| Q |
106 |
ggnnnnnnn---ctcccaacattgtttgtcccttgtgcccttcttgtctaccttgttttcaacactagcatatgaacatcttctctcttggattggtcac |
202 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
17542765 |
ggttttttttttctcccaacattatttgtcccttgtgcccttcttgtctaccttgttttcaacactagcatatgaacatcttctccc-----ttggtcac |
17542859 |
T |
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| Q |
203 |
aaaatttagtaaatgtcaatgactttttatagaata |
238 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
17542860 |
aaaatttagtaaatgtcaatgactttttatagaata |
17542895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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