View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17163_low_8 (Length: 239)
Name: NF17163_low_8
Description: NF17163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17163_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14789906 - 14790126
Alignment:
| Q |
1 |
ctcaaacaccatgcaaattccctagcttattcaagatgtggataacatgacatgcattaaattcacttgtgatgataaaatcattgcccatctcactcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14789906 |
ctcaaacaccatgcaaattccctagcttattcaagatgtggataacatgacatgcattacattcacttgtgatgataaaatcattgcccatctcactcaa |
14790005 |
T |
|
| Q |
101 |
attaggcatctgttcaaacatgcttttgacaaataagggcaatcaagtggtggatgaagtagctggcagttaccatggcccaaatattgtgaaagtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
14790006 |
attaggcatctgttcaaacatgcttttgacaaataagggcaatcaagtggtggatgaagtggctggcagttaccatggcccaaatattgcgaaagtttta |
14790105 |
T |
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| Q |
201 |
aatagaatatgaagtaacaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
14790106 |
aatagaatatgaagtaacaaa |
14790126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17542643 - 17542423
Alignment:
| Q |
1 |
ctcaaacaccatgcaaattccctagcttattcaagatgtggataacatgacatgcattaaattcacttgtgatgataaaatcattgcccatctcactcaa |
100 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17542643 |
ctcaaacaccatgcaaattccccagcttattcaagatgtggataacatgacatgcattacattcacttgtgatgataaaatcattgcccatctcactcaa |
17542544 |
T |
|
| Q |
101 |
attaggcatctgttcaaacatgcttttgacaaataagggcaatcaagtggtggatgaagtagctggcagttaccatggcccaaatattgtgaaagtttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17542543 |
attaggcatctgttcaaacatgcttttgacaaataagggcaatcaagtggtggatgaagtggctggcagttaccatggcccaaatattgtgaaagtttta |
17542444 |
T |
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| Q |
201 |
aatagaatatgaagtaacaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
17542443 |
aatagaatatgaagtaacaaa |
17542423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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