View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_high_12 (Length: 288)
Name: NF17164_high_12
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 2588595 - 2588339
Alignment:
| Q |
20 |
cacatcataatcatctgtttccacagacgcataactgctttcaccaacacaagaagaatttaagaatgattcaggatacatttctcttgccaatctttct |
119 |
Q |
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| T |
2588595 |
cacatcataatcatctgtttccacagacgcataactgctttcaccaacacaagaagattttaagaatgattcaggatacatttctcttgccaatctttct |
2588496 |
T |
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| Q |
120 |
tcataatcaataacagcaagccaaatagctgtatccttagcagtgaatctattttgcaggctcctcgaacgtctagcaatactcttaatcttctgaatat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588495 |
tcataatcaataacagcaagccaaatagctgtatccttagcagtgaatctattttgcaggctcctcgaacgtctagcaatactcttaatcttctgaatat |
2588396 |
T |
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| Q |
220 |
ttggagacatgtgtttgataatggccgtcaaaacacaaactttccaaaccttcttca |
276 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588395 |
ttggagacatatgtttgataatggccgtcaaaacacaaactttccaaaccttcttca |
2588339 |
T |
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