View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17164_high_15 (Length: 249)

Name: NF17164_high_15
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17164_high_15
NF17164_high_15
[»] chr3 (6 HSPs)
chr3 (89-249)||(28394240-28394401)
chr3 (15-90)||(28394091-28394166)
chr3 (208-249)||(28390759-28390800)
chr3 (200-248)||(28369799-28369847)
chr3 (200-248)||(28377617-28377665)
chr3 (200-248)||(28385439-28385487)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 28394240 - 28394401
Alignment:
Q  89 ttagaatattttttgagctgaagtttagttattgttttggcatccaataattgtattttannnnnnnnn-caatttctaattaaccttactacatattgc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  28394240 ttagaatattttttgagctgaagtttagttattgttttggcatccaataattgtatttttttatttttttcaatttctaattaaccttactacatattgc 28394339  T
Q  188 attttctttgagtatagcatagcctatatagggctcacatgaagcaatcacaatcaataaat 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394340 attttctttgagtatagcatagcctatatagggctcacatgaagcaatcacaatcaataaat 28394401  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 28394091 - 28394166
Alignment:
Q  15 tatacgaaacttgtgtcagcatgatgacatagattctaagagcaacaaatccaaaagagtacacaaacatcttgtt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28394091 tatacgaaacttgtgtcagcatgatgacatagattctaagagcaacaaatccaaaagagtacacaaacatcttgtt 28394166  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 28390759 - 28390800
Alignment:
Q  208 agcctatatagggctcacatgaagcaatcacaatcaataaat 249  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28390759 agcctatatagggctcacatgaagcaatcacaatcaataaat 28390800  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 28369799 - 28369847
Alignment:
Q  200 tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaa 248  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  28369799 tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaa 28369847  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 28377617 - 28377665
Alignment:
Q  200 tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaa 248  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  28377617 tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaa 28377665  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 28385439 - 28385487
Alignment:
Q  200 tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaa 248  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  28385439 tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaa 28385487  T

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