View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_high_17 (Length: 227)
Name: NF17164_high_17
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 52113627 - 52113805
Alignment:
| Q |
21 |
gaaacgatgctgagcaagaaattcttgagggaaggtgaaacagtagcagcttcagccacatcaggagaaatcattgaagctgtcaatgcagctgcagtta |
120 |
Q |
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| T |
52113627 |
gaaacgatgctgagcaagaaattcttgagggaaggtgaaacagtagcagcttcagccacatcaggagaaatcattgaagctgtcaatgcagctgcagtta |
52113726 |
T |
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| Q |
121 |
aacctgtcacaattttctctttcaaggatgctttcactacaaaccttgcgttatggtttgatgctgccacagactttgatggcttcagagt |
211 |
Q |
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| T |
52113727 |
aacctgtcacaattttctctttcaaggatgctttcactacaaaccttgc------------tgctgccacagactttgatggcttcagagt |
52113805 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 18100368 - 18100289
Alignment:
| Q |
27 |
atgctgagcaagaaattcttgagggaaggtgaaacagtagcagcttcagccacatcaggagaaatcattgaagctgtcaatgc |
109 |
Q |
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|||||||||||||| |||||||| ||||||||||| || |||||||||||||||||| | |||||||||||||||||| |
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| T |
18100368 |
atgctgagcaagaagttcttgagagaaggtgaaac---ggccgcttcagccacatcaggaaccaccattgaagctgtcaatgc |
18100289 |
T |
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