View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_high_18 (Length: 222)
Name: NF17164_high_18
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 34714402 - 34714586
Alignment:
| Q |
19 |
aaccttcctgcagcttaagaagatcaaagagagttcaagtttgccttgtcattcaagcaacaacaaacaagtcttgttttctctacaccgtctttgatgg |
118 |
Q |
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| T |
34714402 |
aaccttcctgcagcttaagaagatcaaagagagttcaagtttgccttgtcattcaagcaacaacaaacaagtcttgttttctctacaccgtctttgatgg |
34714501 |
T |
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| Q |
119 |
attggcattaaagataggtgacaaggttttagtttgggattcacaaaactggatttacattcagttctcaaatatatttgctgta |
203 |
Q |
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| T |
34714502 |
attggcattaatgataggtgacaaggttttagtttgggattcacaaaactggatttacattcagttctcaaatatatttgttgta |
34714586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 34710706 - 34710889
Alignment:
| Q |
19 |
aaccttcctgcagcttaagaagatcaaagagagttcaagtttgccttgtcattcaagcaacaacaaacaagtcttgttttctctacaccgtctttgatgg |
118 |
Q |
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|||||||||||||||||||||||||||||||| | | |||||| ||| |||| |||||| |||||||||||||||||||||| | |||| ||| | ||| |
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| T |
34710706 |
aaccttcctgcagcttaagaagatcaaagagaatcctagtttgtcttatcatccaagcatcaacaaacaagtcttgttttctgtgcacctgcttgggtgg |
34710805 |
T |
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| Q |
119 |
attggcattaaagataggtgacaaggttttagtttgggattcacaaaactggatttacattcagttctcaaatatatttgctgta |
203 |
Q |
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| T |
34710806 |
attgtcattactgacaagtgacaaagttttagtttgggattcaccaaactgggtttaca-tcatttcttaaatatatttgttgta |
34710889 |
T |
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