View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_high_7 (Length: 314)
Name: NF17164_high_7
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 28394603 - 28394720
Alignment:
| Q |
87 |
cacattctattttttacatgcaaaaggggagaaacatgtctaaacttgtcaagtttatttatgttgtaattatgcttgttaccctatttcttgttgcaaa |
186 |
Q |
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| T |
28394603 |
cacattctattttttacatgcaaaaggggagaaacatgtctaaacttgtcaagtttatttatgttgtaattatgcttgttaccctatttcttgttgcaaa |
28394702 |
T |
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| Q |
187 |
acaagttgattgtgagct |
204 |
Q |
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| T |
28394703 |
agaagttgattgtgagct |
28394720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 28370724 - 28370822
Alignment:
| Q |
87 |
cacattctattttttacatgcaaaaggggagaaacatgtctaaacttgtcaagtttatttatgttgtaattatgcttgttaccctatttcttgttgcaa |
185 |
Q |
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| T |
28370724 |
cacattctatttgttatatgcaaaaggcgagaaatatggctaaacttgtcaagcttgtttatgttataattgtgttttataccctatttcttgttgcaa |
28370822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 28378546 - 28378644
Alignment:
| Q |
87 |
cacattctattttttacatgcaaaaggggagaaacatgtctaaacttgtcaagtttatttatgttgtaattatgcttgttaccctatttcttgttgcaa |
185 |
Q |
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| T |
28378546 |
cacattctatttgttatatgcaaaaggcgagaaatatggctaaacttgtcaagcttgtttatgttataattgtgttttataccctatttcttgttgcaa |
28378644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 28386364 - 28386462
Alignment:
| Q |
87 |
cacattctattttttacatgcaaaaggggagaaacatgtctaaacttgtcaagtttatttatgttgtaattatgcttgttaccctatttcttgttgcaa |
185 |
Q |
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| T |
28386364 |
cacattctatttgttatatgcaaaaggcgagaaatatggctaaacttgtcaagcttgtttatgttataattgtgttttataccctatttcttgttgcaa |
28386462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 28391631 - 28391747
Alignment:
| Q |
87 |
cacattctattttttacatgcaaaaggggagaaacatgtctaaacttgtcaagtttatttatgttgtaattatgcttgttaccctatttcttgttgcaaa |
186 |
Q |
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| T |
28391631 |
cacattctatttgttaaatgcaaaaggcaa-aaatatggctaaacttgtcaagtttgtttatgttataattgtgttttataccctttttctcgttggaac |
28391729 |
T |
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| Q |
187 |
acaagttgattgtgagct |
204 |
Q |
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| T |
28391730 |
agaaattgtttgtgagct |
28391747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Original strand, 28394786 - 28394815
Alignment:
| Q |
270 |
tctttcttcattacagcgggtgttctttgt |
299 |
Q |
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| T |
28394786 |
tctttcttcattacagcgggtgttctttgt |
28394815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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