View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_high_8 (Length: 311)
Name: NF17164_high_8
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 41137492 - 41137802
Alignment:
| Q |
1 |
cagaaggaaaaggattaaagaaacagaaacaataaatgaaacaaacctatgacacaagcaaagagcgaggagaagaatgagagctactgctggaaaatcc |
100 |
Q |
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| T |
41137492 |
cagaaggaaaaggattgaagaaacagaaacaataaatgaaacaaacctatgacacaagcaaagagtgaggagaagaatgagagctactgctggaaaatcc |
41137591 |
T |
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| Q |
101 |
aacatgttataatcctttggcaatccatgaacttctactctccatacattgggattattttctccaaaagcaaaactcaaatattccgtaaaactcctag |
200 |
Q |
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| T |
41137592 |
aacatgttataatcctttggcaatccatgaacttctactctccatacattgggattattttctccaaaagcaaaactcaaatattctgtaaaactcctag |
41137691 |
T |
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| Q |
201 |
ctacagcagcatttgaaaaaacatactccattagtatatttgccccaccaaaatatcccaaaaattctcctgcatcatgtgtnnnnnnngaaataaataa |
300 |
Q |
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| T |
41137692 |
ctacagcagcatttgaaaaaacatactccattagtatatttgccccaccaaaatatcccaaaaattctcctgcatcatgtgtaaaaaaagaaataaataa |
41137791 |
T |
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| Q |
301 |
cgacagacact |
311 |
Q |
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| T |
41137792 |
cgacagacact |
41137802 |
T |
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