View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_low_11 (Length: 296)
Name: NF17164_low_11
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 42228341 - 42228626
Alignment:
| Q |
1 |
tacaatgcaaccaattgggtatctaaattagaactcgattattcatttaaactgaaaaagaatcaaacttttcagtgatttggtttttcaactgtagcaa |
100 |
Q |
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| T |
42228341 |
tacaattcaaccaattgggtatctaaattagaactcgattattcatctaaactgaaaaagaatcaaacttttcagtgatttggtttttcaactgtagcaa |
42228440 |
T |
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| Q |
101 |
acaaatgggtcataaatttctggagataaatggaataatataaaatagtagttacctgggaattgaaaaaatgcgaggttgaagatgagatgtgattttg |
200 |
Q |
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| T |
42228441 |
acaaatgggtcataaatttttggagataaatggaataatataaaatagtagttacctgggaattgaataaatgcgaggttgaagatgagatgtgattttg |
42228540 |
T |
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| Q |
201 |
aagccaatgtttcccgctaaatttcttgccatgttcatgtaaccaaaatttgcgtcgtaggaaggatttcttactccttgtttctt |
286 |
Q |
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| T |
42228541 |
aagccaatgtttcccgctaaatttcttgccatgttcatgtaaccaaaatttgcgtcgtaggaaggatttctcactccttgtttctt |
42228626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 42228224 - 42228298
Alignment:
| Q |
8 |
caaccaattgggtatctaaattagaactcgattattcatttaaa-ctgaaaaagaatcaaacttttcagtgattt |
81 |
Q |
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| T |
42228224 |
caaccaattggttagctaaatttgaactcaattattaattaaaaactgaaaaagaatcaaacttttctgtgattt |
42228298 |
T |
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