View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_low_14 (Length: 250)
Name: NF17164_low_14
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 46603882 - 46603648
Alignment:
| Q |
16 |
atcaagagagaccagaccagagcactcactgaatgacactgttaagtggacggtaggcagtataattaaactatgcagaagtagtagcagttgactattt |
115 |
Q |
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| T |
46603882 |
atcaagagagaccagaccagagcactcactgaatcacagtgttaagtggacggtaggcagtataattaaactatgcagaagtagtagcagttgactattt |
46603783 |
T |
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| Q |
116 |
tattggatgaacagaacaaagcagtcagcacacgcgggaagatgtattacaattcaaccagcaaataggttggaagggggcatactggacccattcatta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46603782 |
tattggatgaacagaacaaagcagtcagcacacgcgggaagatgtattacaattcaaccggcaaataggttggaagggggcatactggacccattcatta |
46603683 |
T |
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| Q |
216 |
atactaaaatatatggttccataatcccttctcac |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
46603682 |
atactaaaatatatggttccataatcccttctcac |
46603648 |
T |
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