View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_low_2 (Length: 534)
Name: NF17164_low_2
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 11 - 534
Target Start/End: Original strand, 1328928 - 1329451
Alignment:
| Q |
11 |
gtgagatgaagttagagcaaattttttccaaaatgcagcatttgcaattgcttcttgaacgctttttagcttgtcgccccacaggtttgtgatcattaga |
110 |
Q |
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| T |
1328928 |
gtgaaatgaagttagagcaaattttttccaaaatgcagcatttgcaattgcttcttgaacgctttttagcttgtcgccccacaggtttgtgatcattaga |
1329027 |
T |
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| Q |
111 |
ccatacattttgcataacaaaatacttatccttccattcaatttgctttatatattattagattttatctagttttttcttatcaaacacctttttgcaa |
210 |
Q |
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| T |
1329028 |
ccatacattttgcataacaaaatacttatccttccattcaatttgctttatatattattagattttatctagttttttcttatcaaacacctttttgcaa |
1329127 |
T |
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| Q |
211 |
tcaaatatatctaagtatgcataccatatgatatattcacattacattacacatgtatacaaagcattctcatggctatctgtttcaatgcaacagggac |
310 |
Q |
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| T |
1329128 |
tcaaatatatctaagtatgcataccatatgatatattcacattacattacacatgtatacaaagcattctcatggctatctgtttcaatgcaacaggaac |
1329227 |
T |
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| Q |
311 |
agcaaagaaccatagaattgtgatagtggctctttatccaattgtgaaggagagttttcaatcatattacgacatatcagaaatattgagcatcttaatc |
410 |
Q |
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| T |
1329228 |
agcaaagagccatagaattgtgatagtggctctttatccaattgtgaaggagagttttcaatcatattacgacatatcagaaatattgagcatcttaatc |
1329327 |
T |
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| Q |
411 |
gaccgttttcctgacatggatgtcgcagactgtatcaaggtgtatgacattttctgtcgtattggaaaacagtttgatgagctagacctcttctatggat |
510 |
Q |
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| T |
1329328 |
gaccgtttttctgacatggatgtcgcagactgtatcaaggtgtatgacattttctgtcgtattggaaaacagtttgatgagctagacctcttctatggat |
1329427 |
T |
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| Q |
511 |
ggtccaagaatattggaatttgtc |
534 |
Q |
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| T |
1329428 |
ggtccaagaatattggaatttgtc |
1329451 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 1924822 - 1924897
Alignment:
| Q |
302 |
aacagggacagcaaagaaccatagaattgtgatagtggctctttatccaattgtgaaggagagttttcaatcatat |
377 |
Q |
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| T |
1924822 |
aacaggtagagcaaagacacatagaatggtgatagtggcactctacccaattgtgaaggagagttttcaaacatat |
1924897 |
T |
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