View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_low_4 (Length: 401)
Name: NF17164_low_4
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 4705824 - 4705497
Alignment:
| Q |
11 |
cagagattagtagcggtacataatgtaatagatattataacatttcaaatgagagtataaagagtcactgcggccaaaatacaaattgcagggatcatat |
110 |
Q |
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| T |
4705824 |
cagagattagtagcggtacataatgtaatagatattataacatttcaaatgagagtataaagagtcactgcggccaaaatacaaattgcagggatcatat |
4705725 |
T |
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| Q |
111 |
ttgtatagaacaacagactaaaataattatggaaaaagttccaatattgattatcaaattatgtgtaggccaagccaataattatgaaagaagttccaat |
210 |
Q |
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| T |
4705724 |
ttgtatagaacaacagactaaaataattatggaaaaagttccaatattgattatcaaattatgtgtaggccaagccaataattatgaaagaagttccaat |
4705625 |
T |
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| Q |
211 |
gaagagagcatgaactgattaggccacgtcaataaaattctaataaatagatccaataaaattatgtttaggccacgccaataaaaattatgtataggcc |
310 |
Q |
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| T |
4705624 |
gaagagagcatgaactgattaggccacgtcaataaaattctaataaatagatccaatgaaattatgtttaggccacgccaat------------------ |
4705543 |
T |
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| Q |
311 |
gagccaataattatgtaaaaagttccaataaagagtgcatagacgg |
356 |
Q |
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| T |
4705542 |
gagccaataattatgtaaaaagttccaataaagagtgcataaacgg |
4705497 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 401
Target Start/End: Original strand, 11091965 - 11091993
Alignment:
| Q |
373 |
gcagaagccggggttcgaatcccggacac |
401 |
Q |
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| T |
11091965 |
gcagaagccggggttcgaatcccggacac |
11091993 |
T |
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