View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_low_5 (Length: 372)
Name: NF17164_low_5
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 356
Target Start/End: Complemental strand, 46439076 - 46438726
Alignment:
| Q |
4 |
ttcagtttagtagtccctatggtatcaaacaaatatat--cataaagcacttggtcaatagaatcgatttattctcatgcttacggtatctacacagtat |
101 |
Q |
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| T |
46439076 |
ttcagtttagtagtccctatggtatcaaacaaatatatatcataaagcacttggtcaatagaatcgatttattctcatgcttacggtatctacacagtat |
46438977 |
T |
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| Q |
102 |
atggtcaagtttttaggtactgtcaatgaataaacgcacattatgcatgccaaacaaagttagatgatggatatgtgaaagtaggtactaataaaagggt |
201 |
Q |
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| T |
46438976 |
atggtcaagtttttaggtactgtcaatgaataaatgcacatt----atgccaaacaaagttagatgatggatatgtgaaagtaggtactaataaaagggt |
46438881 |
T |
|
| Q |
202 |
tttaatatcatcatgcnnnnnnnncctttatcgattagtaaattttatgatgaccaagtaaaatccgaaaatagattgcctaaatatattcttctgaaag |
301 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46438880 |
tttaatatcatcatgcttttttttcctttatcgattagtaaattttaagatggccaagtaaaatccgaaaatagattgcctaaatatattcttctgaaag |
46438781 |
T |
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| Q |
302 |
aaagctnnnnnnntcatcatattcttctgaaatataaaatacattaccagggata |
356 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46438780 |
aaagctaaaaaaatcatcatattcttctgaaatataaaatacagtaccagggata |
46438726 |
T |
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