View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17164_low_6 (Length: 350)
Name: NF17164_low_6
Description: NF17164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17164_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 23694987 - 23694669
Alignment:
| Q |
18 |
cattagatcttccctccctcgctcgccgactttcaagctttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaat |
117 |
Q |
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|||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23694987 |
cattagatcttccctccctcgctcaccatctttcaagcttagaaactctttacaatcaacacctatgtgccatgaaaccttacattgtgcacagaacaat |
23694888 |
T |
|
| Q |
118 |
ctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694887 |
ctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaac |
23694788 |
T |
|
| Q |
218 |
ctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694787 |
ctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttggtaaaattgaactacaatcatgaggctccaaaatatcattgcattt |
23694688 |
T |
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| Q |
318 |
tggatcaggacattttacc |
336 |
Q |
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||||||||||||||||||| |
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| T |
23694687 |
tggatcaggacattttacc |
23694669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 23700814 - 23701132
Alignment:
| Q |
18 |
cattagatcttccctccctcgctcgccgactttcaagctttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaat |
117 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700814 |
cattagatcttccatccctcgctcgccgtctttcaagctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattgtgcacagaacaat |
23700913 |
T |
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| Q |
118 |
ctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700914 |
ctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaac |
23701013 |
T |
|
| Q |
218 |
ctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattt |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23701014 |
ctaacaccatattctcacaaagtgaattttcccatctatcaaacacatcctttggtaaaattgaacaacaatcatgaggctccaaaatatcattgcattt |
23701113 |
T |
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| Q |
318 |
tggatcaggacattttacc |
336 |
Q |
| |
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||||||||||||||||||| |
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| T |
23701114 |
tggatcaggacattttacc |
23701132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 23697118 - 23696794
Alignment:
| Q |
18 |
cattagatcttccctccctcgctcgccgactttcaagctttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaat |
117 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||| || ||| |
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| T |
23697118 |
cattagatctttcctccctcgctcgccatcttccaagctttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacaaaataat |
23697019 |
T |
|
| Q |
118 |
ctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaac |
217 |
Q |
| |
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|||| |||||| ||||| || ||| | || |||| | ||| ||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||| |
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| T |
23697018 |
ctattacaatgaggacactcagaaacggttacaacttcctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtacaatttttgtgaat |
23696919 |
T |
|
| Q |
218 |
ctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattt |
317 |
Q |
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||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || || | ||||||| |||||||||||| ||| ||||||| || |
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| T |
23696918 |
ctaacaccatattctcacaaagtgcctttccccatctctcaaacacatcctttggtataagggtgctacaattatgaggctccaatataccattgcaatt |
23696819 |
T |
|
| Q |
318 |
tggatcaggacattttacctttgct |
342 |
Q |
| |
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||||| ||||||||||||| ||||| |
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| T |
23696818 |
tggataaggacattttaccattgct |
23696794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 334
Target Start/End: Original strand, 8148995 - 8149270
Alignment:
| Q |
56 |
tttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcc |
155 |
Q |
| |
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||||||||||| ||||| | || | |||||||||| ||| | ||||||||| ||||| | ||||||||||||||||||||||| | |||||| | | |
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| T |
8148995 |
tttgaaactctctacaatcgacttccgtgtgccatggaacttgacattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttc |
8149094 |
T |
|
| Q |
156 |
cttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatcta |
255 |
Q |
| |
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||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| ||| || |||| | | ||| ||||||| | ||||||| |
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| T |
8149095 |
atttccatcattcaccaacatagctgaacaatccttaaaaggacaataaattttctttgatccgaacatcgaa---tcaactagtgcatctccccatctt |
8149191 |
T |
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| Q |
256 |
tcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacatttta |
334 |
Q |
| |
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|| ||||||||||||| || ||||||| |||| | |||| || ||| || |||||| ||||||||||||||||||| |
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| T |
8149192 |
tcgaacacatcctttggtataattgaaatacattgttgagtgtcaaaattactattgcaatttggatcaggacatttta |
8149270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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