View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_high_11 (Length: 255)
Name: NF17165_high_11
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 5195431 - 5195606
Alignment:
| Q |
58 |
ttaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaa |
157 |
Q |
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|||||| |||||||| ||||||| || || ||||||||||| || ||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |
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| T |
5195431 |
ttaattatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagcaacttaa |
5195530 |
T |
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| Q |
158 |
caaatctcagagttcttgatattggcaataatttgttcagtggaaattttccatctttcattagcaatctcacatc |
233 |
Q |
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|||| |||||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5195531 |
caaacctcagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatc |
5195606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 5159788 - 5159964
Alignment:
| Q |
57 |
attaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaactta |
156 |
Q |
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||||||| |||||||| ||||||| ||||| ||||||||||| || ||||||||| | ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
5159788 |
attaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaactta |
5159887 |
T |
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| Q |
157 |
acaaatctcagagttcttgatattggcaataatttgttcagtggaaattttccatctttcattagcaatctcacatc |
233 |
Q |
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||||| |||||||||||||| || | |||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5159888 |
acaaacctcagagttcttgaacttagtaataatctgttcagtggaaagtttccatctttcattagcaatctcacatc |
5159964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 5172705 - 5172881
Alignment:
| Q |
58 |
ttaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaa |
157 |
Q |
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|||||| |||||||| ||||||| ||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
5172705 |
ttaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaa |
5172804 |
T |
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| Q |
158 |
caaatctcagagttcttgatattggcaataatttgttcagtggaaattttccatctttcattagcaatctcacatcc |
234 |
Q |
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|||| |||||| ||||||| || || ||||| | |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
5172805 |
caaacctcagaattcttgaccttagccataatctattcagtggaaattttccatccttcattagtaatctcacatcc |
5172881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 5182036 - 5182212
Alignment:
| Q |
57 |
attaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaactta |
156 |
Q |
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||||||| |||||||| ||||||| ||||| ||||||||||| | ||||||||| | ||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
5182036 |
attaattatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaactta |
5182135 |
T |
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| Q |
157 |
acaaatctcagagttcttgatattggcaataatttgttcagtggaaattttccatctttcattagcaatctcacatc |
233 |
Q |
| |
|
||||| || ||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5182136 |
acaaaccttagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatc |
5182212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 58 - 234
Target Start/End: Complemental strand, 4842820 - 4842644
Alignment:
| Q |
58 |
ttaattctgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaa |
157 |
Q |
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|||||| |||||||| ||||||| ||||| ||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
4842820 |
ttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagtaacttaa |
4842721 |
T |
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| Q |
158 |
caaatctcagagttcttgatattggcaataatttgttcagtggaaattttccatctttcattagcaatctcacatcc |
234 |
Q |
| |
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|||| |||||| ||||||| || || ||||| ||||| |||||||||||||||| |||| || ||||||||||||| |
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| T |
4842720 |
caaacctcagaattcttgaccttagccataatctgttcggtggaaattttccatccttcactaccaatctcacatcc |
4842644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 65 - 233
Target Start/End: Original strand, 5213604 - 5213772
Alignment:
| Q |
65 |
tgacaggattatgcaagttgaaagatttggtagagctagatatcagcaaaaacatgtttggtgctaaacttcctgagtgtttaagcaacttaacaaatct |
164 |
Q |
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|||||||| ||||||| ||||| |||||||||||||||||||||||| | ||||||||| | || ||||||| ||||||||||||||||||||||| || |
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| T |
5213604 |
tgacaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaacct |
5213703 |
T |
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| Q |
165 |
cagagttcttgatattggcaataatttgttcagtggaaattttccatctttcattagcaatctcacatc |
233 |
Q |
| |
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| |||||||| || || |||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
5213704 |
gaatgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcacatc |
5213772 |
T |
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