View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_high_4 (Length: 371)
Name: NF17165_high_4
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 2751804 - 2752152
Alignment:
| Q |
1 |
ttattataatttggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgtccatgta |
100 |
Q |
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| T |
2751804 |
ttattataatatggctgtagaacctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattttgaagtttctgtccatgta |
2751903 |
T |
|
| Q |
101 |
ataatcaaaatatcctcatttgaatgaatatttttattctgctaaccaagattaattctgctttcattatatttaagttgattcaaagttaatcaagagg |
200 |
Q |
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| T |
2751904 |
ataatcaaaatatcctcatttgaatgaatatttttattttgctaaccaagattaattctgctttcat--tatttaagttgattcaaagttaatcaagagg |
2752001 |
T |
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| Q |
201 |
acatgtatgtgacttagccaacctgcttcatcaatccctcgttacctaattatttttggaagctttaaaaaggccttatatatggtctaaactggttccc |
300 |
Q |
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| T |
2752002 |
acatgtatgtgacttagccaactggcttcatc-atccctcgttacctaattatttttggaagctttaaaaaggccttgtatatggtctaaactggctccc |
2752100 |
T |
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| Q |
301 |
agcctaggttcaactatagtttcttcctcaccgattatttattcataatttc |
352 |
Q |
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| T |
2752101 |
agcctaggttcaactctagtttcttcctcaccgattatttattcataatttc |
2752152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 2800434 - 2800491
Alignment:
| Q |
24 |
ctttcattcaaaaccttgtaatcacaacctatacacggactccattcagacgtcattt |
81 |
Q |
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|||| ||||||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
2800434 |
ctttgattcaaaaccttgtaatcaagacctatatttggactccattcagacatcattt |
2800491 |
T |
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