View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_high_5 (Length: 370)
Name: NF17165_high_5
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_high_5 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 24198464 - 24198587
Alignment:
| Q |
94 |
aaataaaataatcacacatgacatccttgtcatttaagaatgtgtccacataatcattgactttgtaaaattcaaaggaagagaccacttttgcaaaatg |
193 |
Q |
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|||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24198464 |
aaataaaataatcacacatgacgtccctgtcatctaagaatgtgtccacataatcattgacttggtaaaattcaaaggaagagaccacttttgcaaaatg |
24198563 |
T |
|
| Q |
194 |
tgctatacatagagggcaaaattg |
217 |
Q |
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||||||||||||||||||||||| |
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| T |
24198564 |
ggctatacatagagggcaaaattg |
24198587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 16912270 - 16912393
Alignment:
| Q |
94 |
aaataaaataatcacacatgacatccttgtcatttaagaatgtgtccacataatcattgactttgtaaaattcaaaggaagagaccacttttgcaaaatg |
193 |
Q |
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|||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
16912270 |
aaataaaataatcacacatgacgtccctgtcatctaagaatatgtccacataatcattgacttggtaaaattcaaaggaagataccacttttgcaaaatg |
16912369 |
T |
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| Q |
194 |
tgctatacatagagggcaaaattg |
217 |
Q |
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||||||||||||||||||||||| |
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| T |
16912370 |
ggctatacatagagggcaaaattg |
16912393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 23300822 - 23300942
Alignment:
| Q |
98 |
aaaataat-cacacatgacatccttgtcatttaagaatgtgtccacataatcattgactttgtaaaattcaaaggaagagaccacttttgcaaaatgtgc |
196 |
Q |
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|||||||| |||||||||||||||||| || ||||||||||||||||||| ||| ||| | |||||| |||||||||| || |||||||||||||||| |
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| T |
23300822 |
aaaataatacacacatgacatccttgttatctaagaatgtgtccacataagcatcgacgtggtaaaactcaaaggaagggattacttttgcaaaatgtgt |
23300921 |
T |
|
| Q |
197 |
tatacatagagggcaaaattg |
217 |
Q |
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|| || ||| ||||||||||| |
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| T |
23300922 |
taaacgtagtgggcaaaattg |
23300942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 24197462 - 24197362
Alignment:
| Q |
117 |
tccttgtcatttaagaatgtgtccacataatcattgactttgtaaaattcaaaggaagagaccacttttgcaaaatgtgctatacatagagggcaaaatt |
216 |
Q |
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|||| ||||| ||||||||||||||||||| ||||||||| | ||| | |||||||| | |||||||||||||| | |||| ||||| ||| ||||||| |
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| T |
24197462 |
tcctagtcatctaagaatgtgtccacataagcattgacttgatcaaaatgaaaggaaggggccacttttgcaaaaggggctaaacataaaggacaaaatt |
24197363 |
T |
|
| Q |
217 |
g |
217 |
Q |
| |
|
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| T |
24197362 |
g |
24197362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 16911268 - 16911168
Alignment:
| Q |
117 |
tccttgtcatttaagaatgtgtccacataatcattgactttgtaaaattcaaaggaagagaccacttttgcaaaatgtgctatacatagagggcaaaatt |
216 |
Q |
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|||| ||||| ||||||| ||||||||||| ||||||||| | ||| | ||||||| | |||||||||||||| | |||| ||||| ||| ||||||| |
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| T |
16911268 |
tcctagtcatctaagaatttgtccacataagcattgacttgatcaaaatgaaaggaatgggccacttttgcaaaaggggctaaacataaaggacaaaatt |
16911169 |
T |
|
| Q |
217 |
g |
217 |
Q |
| |
|
| |
|
|
| T |
16911168 |
g |
16911168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 26265 - 26170
Alignment:
| Q |
122 |
gtcatttaagaatgtgtccacataatcattgactttgtaaaattcaaaggaagagaccacttttgcaaaatgtgctatacatagagggcaaaattg |
217 |
Q |
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||||||||||||| | || |||||||||||||||| || ||| | |||||||| | |||||||||||||| | | || ||| ||||||||||||| |
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| T |
26265 |
gtcatttaagaatatctctacataatcattgacttggttaaaataaaaggaagtggccacttttgcaaaaggggataatcattgagggcaaaattg |
26170 |
T |
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