View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17165_high_7 (Length: 286)
Name: NF17165_high_7
Description: NF17165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17165_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 12695620 - 12695871
Alignment:
| Q |
16 |
atgcacttcagaagcatgatgtgcaacaggaacatgaaagtgttgctcccaaacaggattttcgctattgctaatcacaaaagccctaccaactacagca |
115 |
Q |
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| T |
12695620 |
atgcacttcagaagcatgatgtgcaacaggaacatgaaagtgttgctcccaaacaggattttcgctattgctaatcacaaaagtcctaccaactacagca |
12695719 |
T |
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| Q |
116 |
tttgataaagaaatagacacataaggatcactagtaatcttcctagtcactgttccctcaatcttattacccacattaccaggaaatttaccaaacacat |
215 |
Q |
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| T |
12695720 |
tttgataaagaaatagacacataaggatcactagtaatcttcctagtcattgttccctcaatcttattacccacattaccaggaaatttaccaaacacat |
12695819 |
T |
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| Q |
216 |
cccctaaagtcttatgaaacatatccatatttggaagattcttagcactatg |
267 |
Q |
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| T |
12695820 |
cccctaaagtcttatgaaacatatccatatttggaagattcttagcactatg |
12695871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 28531166 - 28530928
Alignment:
| Q |
17 |
tgcacttcagaagcatgatgtgcaacaggaacatgaaagtgttgctcccaaacaggattttcgctattgctaatcacaaaagccctaccaactacagcat |
116 |
Q |
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| T |
28531166 |
tgcacttcagcagcgttatgtgcaacaggaacatagaagtgttgactccaaataggattttcagaattgctaatcacaaaagtcctcccaattactgcat |
28531067 |
T |
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| Q |
117 |
ttgataaagaaatagacacataaggatcactagtaatcttcctagtcactgttccctcaatcttattacccacattaccaggaaatttaccaaacacatc |
216 |
Q |
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| T |
28531066 |
ttgccactgaaatcgaaacataaggatcactggtaatcttcttattcattgttccttcaattttattacttacactaccaggtaatttaccaaacatatc |
28530967 |
T |
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| Q |
217 |
ccctaaagtcttatgaaacatatccatatttggaagatt |
255 |
Q |
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| T |
28530966 |
ccccaatgttttgtggaacatgtccatattcggaagatt |
28530928 |
T |
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